摘""要:TFL1基因?qū)儆诹字R掖及方Y(jié)合蛋白(phosphatidylethanolamine-binding"protein,"PEBP)家族成員,與植物開(kāi)花調(diào)控密切相關(guān)。為探究秋石斛中TFL1基因的功能,本研究基于花序發(fā)育轉(zhuǎn)錄組數(shù)據(jù)庫(kù)克隆了1個(gè)秋石斛TFL1同源基因DenTFL1,并對(duì)其進(jìn)行生物信息分析、蛋白結(jié)構(gòu)和亞細(xì)胞定位預(yù)測(cè)以及表達(dá)模式的分析。結(jié)果表明:秋石斛DenTFL1基因cDNA全長(zhǎng)522"bp,編碼173個(gè)氨基酸;DenTFL1蛋白分子式為C870H1354N246O249S6,分子量為19.43"kDa,理論等電點(diǎn)(pI)為7.82,蛋白具有親水性,結(jié)構(gòu)穩(wěn)定;DenTFL1蛋白不含有信號(hào)肽和跨膜結(jié)構(gòu)域,預(yù)測(cè)該蛋白定位于細(xì)胞質(zhì),其二級(jí)結(jié)構(gòu)以無(wú)規(guī)則卷曲為主,占比61.85%,還含有23.70%的延伸鏈,14.45%的α-螺旋,三維結(jié)構(gòu)模型與二級(jí)結(jié)構(gòu)基本一致。蛋白保守結(jié)構(gòu)域分析結(jié)果顯示,DenTFL1含有PEBP保守結(jié)構(gòu)域。根據(jù)氨基酸序列比對(duì)和系統(tǒng)進(jìn)化樹(shù)分析發(fā)現(xiàn),DenTFL1基因與金釵石斛、球花石斛中的同源基因親緣關(guān)系較近且蛋白序列的一致性較高,進(jìn)化較為保守。蛋白質(zhì)互作網(wǎng)絡(luò)預(yù)測(cè)結(jié)果顯示,秋石斛DenTFL1蛋白主要與AT5G63440、LFY、SOC1、AGL24、AGL8等蛋白發(fā)生互作。實(shí)時(shí)定量PCR結(jié)果表明,DenTFL1基因在秋石斛不同生長(zhǎng)發(fā)育階段的各個(gè)組織部位均有表達(dá),其中在幼苗和成熟株的莖以及花柄中的表達(dá)量最高,在幼苗的根以及中苗的葉片和根中的表達(dá)量則相對(duì)較低;在花序發(fā)育的不同階段均有較高的表達(dá)量(除了長(zhǎng)度為3.0"cm的花序之外),在發(fā)育后期的花苞和成熟花各輪花器官中高表達(dá),而在發(fā)育早期的各輪花器官中的表達(dá)量相對(duì)較低。本研究為進(jìn)一步揭示TFL1基因在秋石斛中花期調(diào)控提供一定的理論依據(jù)。
關(guān)鍵詞:秋石斛;DenTFL1;基因克?。槐磉_(dá)分析中圖分類(lèi)號(hào):S682.31""""""文獻(xiàn)標(biāo)志碼:A
Cloning"and"Expression"Analysis"of"DenTFL1"Gene"in"Dendrobium"Hybrid
MO"Shunjin1,2,"LI"Zhengqi3,"YU"Xiaoyun1,2,"LU"Shunjiao1,2,"LIAO"Yi1,2,"YI"Shuangshuang1,2*
1."Tropical"Crops"Genetic"Resources"Institute,"Chinese"Academy"of"Tropical"Agricultural"Sciences"/"Key"Laboratory"of"Crop"Gene"Resources"and"Germplasm"Enhancement"in"Southern"China,"Ministry"of"Agriculture"and"Rural"Affairs"/"Key"Laboratory"of"Tropical"Crops"Germplasm"Resources"Genetic"Improvement"and"Innovation"of"Hainan"Province,"Haikou,"Hainan"571101,"China;"2."Hainan"Engineering"Technology"Research"Center"of"Tropical"Ornamental"Plant"Germplasm"Innovation"and"Utilization,"Danzhou,"Hainan"571737,"China;"3."School"of"Tropical"Agriculture"and"Forestry,"Hainan"University,"Danzhou,"Hainan"571737,"China
Abstract:"Gene"TFL1"belongs"to"the"phosphatidylethanolamine"binding"protein"(PEBP)"family"and"is"closely"related"to"plant"flowering"regulation."To"explore"the"functions"of"TFL1"gene"in"Dendrobium"hybrid,"based"on"the"transcriptome"data"of"floral"in"Dendrobium"hybrid,"a"TFL1"gene"was"cloned"and"named"DenTFL1."And"the"bioinformatic"analysis"protein"structure"and"subcellular"localization"prediction,"expression"patterns"analysis"were"done"to"explored"the"functional"of"DenTFL1."The"results"showed"that"the"full"length"of"DenTFL1"cDNA"sequence"was"522"bp,"encoding"173"amino"acids."Bioinformatics"analysis"showed"that"the"molecular"formula"of"DenTFL1"was"C870H1354N246O249S6,"the"theoretical"relative"molecular"mass"of"the"protein"was"19.43"kDa,"and"the"theoretical"isoelectric"point"was"7.82,"and"the"protein"was"hydrophilic"and"structurally"stable."Subcellular"prediction"showed"that"it"was"located"in"the"cytoplasm,"without"signal"peptide"and"transmembrane"domain."The"secondary"structure"was"dominated"by"61.85%"of"random"curl,"also"contained"23.70%"of"the"extended"chain,"14.45%"of"α-helix."The"three-dimensional"structural"model"was"basically"consistent"with"the"secondary"structure."The"conserved"domain"analysis"showed"that"DenTFL1"had"a"conserved"PEBP"domain"and"amino"acid"sequence"alignment"and"phylogenetic"tree"analysis"showed"that"DenTFL1"was"closely"related"to"D."nobile"and"D."thyrsiflorum."The"constructed"protein"network"showed"that"DenTFL1"mainly"interacted"with"AT5G63440,"LFY,"SOC1,"AGL24,"AGL8."Expression"analysis"showed"that"DenTFL1"was"expressed"in"all"tissues"of"different"development"stages"of"Dendrobium"hybrid,"and"had"the"highest"expression"level"in"the"stems"of"young"and"mature"plantlet"and"the"flower"stalks,"and"had"a"lower"expression"level"in"the"roots"of"young"plantlet"and"the"leaves"and"roots"of"medium"plantlets."Moreover,"it"had"a"high"expression"in"different"development"stage"of"inflorescence"except"3.0"cm"long"inflorescence."It"also"showed"high"expression"in"7.0"mm"and"9.0"mm"width"floral"bud"and"the"tissues"of"fully"open"flower,"but"expressed"lower"in"the"tissues"of"early"development"stages"of"floral"bud."The"research"could"provide"a"reference"for"the"flowering"regulation"of"Dendrobium"hybrid,"and"add"relevant"information"for"the"study"of"TFL1.
Keywords:"Dendrobium"hybrid;"DenTFL1;"gene"cloning;"expression"analysis
DOI:"10.3969/j.issn.1000-2561.2025.04.003
秋石斛,也被稱(chēng)為蝴蝶石斛,是蘭科(Orchidaceae)石斛屬多年生草本植物,具有重要觀賞價(jià)值。海南處于熱帶地區(qū),憑借其優(yōu)越的氣候及地理優(yōu)勢(shì),是熱帶花卉的主產(chǎn)區(qū),也是我國(guó)秋石斛的主要產(chǎn)地[1]。近年來(lái),秋石斛的栽種面積逐年擴(kuò)大,每年的秋石斛出貨量也不斷增多[2]。我國(guó)引入秋石斛栽植時(shí)間較晚,但是近年來(lái)秋石斛盆花生產(chǎn)發(fā)展速度快,具有很高的研究?jī)r(jià)值和商業(yè)前景。秋石斛花期集中在秋季,國(guó)內(nèi)花卉消費(fèi)呈現(xiàn)節(jié)日消費(fèi)的特點(diǎn),如在春節(jié)、情人節(jié)等節(jié)日前后市場(chǎng)需求較大,秋石斛自然花期和市場(chǎng)需求旺季不遇,導(dǎo)致花卉的商品價(jià)值大大降低,嚴(yán)重影響了秋石斛產(chǎn)業(yè)發(fā)展。使用植物生長(zhǎng)調(diào)節(jié)劑可以誘導(dǎo)秋石斛提前開(kāi)花[3],但是會(huì)造成花朵數(shù)量減少甚至畸形等不利影響[4]。作為觀花植物,秋石斛的成花狀況是影響產(chǎn)業(yè)發(fā)展中的關(guān)鍵因素,成花質(zhì)量直接關(guān)系到秋石斛的觀賞價(jià)值。隨著分子生物學(xué)的發(fā)展,蘭花在分子育種方面也進(jìn)行了深入的研究[5],有效調(diào)控秋石斛花期使之能按需開(kāi)花是目前秋石斛生產(chǎn)急需解決的關(guān)鍵問(wèn)題之一。目前關(guān)于秋石斛開(kāi)花相關(guān)基因研究較少,本研究對(duì)調(diào)控秋石斛花期相關(guān)的DenTFL1基因進(jìn)行克隆和表達(dá)分析,以期為秋石斛花期調(diào)控提供有效的理論依據(jù)。
前人研究發(fā)現(xiàn)植物的開(kāi)花途徑主要有6種,即光周期途徑(photoperiod"pathway)、春化途徑(vernalization"pathway)、自主途徑(autonomous"pathway)、赤霉素途徑(gibberellin"pathway)、環(huán)境溫度途徑(ambient"temperature"pathway)和年齡途徑(age"pathway)[6]。各調(diào)控途徑的不同通路在植物體內(nèi)交匯后,共同作用將開(kāi)花信號(hào)傳遞給一系列成花/抑花因子,如FLOWERING"LOCUS"T(FT)和TERMINAL"FLOWER"1(TFL1)[7],開(kāi)花調(diào)節(jié)因子被激活后共同調(diào)控植物的花期[8]。這2個(gè)調(diào)節(jié)因子均屬于PEBP(phosphatidylethanolamine-"binding"protein)家族成員[9]。盡管FT-like基因與TFL1-like基因在序列上展現(xiàn)出高度同源性,但二者卻具有拮抗功能[10]。具體而言,F(xiàn)T-like基因?qū)﹂_(kāi)花過(guò)程具有促進(jìn)作用,而TFL1-like基因則起到抑制開(kāi)花的作用[11]。在擬南芥中,F(xiàn)T蛋白與bZIP轉(zhuǎn)錄因子FD蛋白結(jié)合形成FT/FD蛋白復(fù)合物,誘導(dǎo)開(kāi)花基因表達(dá),促進(jìn)擬南芥開(kāi)花,而TFL1基因表達(dá)時(shí),TFL1蛋白也可以與FD蛋白結(jié)合,但是TFL1/FD復(fù)合物產(chǎn)生開(kāi)花抑制基因,從而抑制擬南芥的開(kāi)花[12]。迄今為止,開(kāi)花抑制因子TFL1同源基因被發(fā)現(xiàn)存在于番茄[13]、玉米[14]、龍膽[15]、菊花[16]、水仙[17]以及藏紅花[18]等植物中。TFL1基因在秋石斛中的作用機(jī)理并不明確,本研究基于花序發(fā)育轉(zhuǎn)錄組數(shù)據(jù)庫(kù),克隆秋石斛開(kāi)花關(guān)鍵基因DenTFL1,分析預(yù)測(cè)其蛋白結(jié)構(gòu)和系統(tǒng)進(jìn)化關(guān)系等,并通過(guò)實(shí)時(shí)定量PCR分析基因表達(dá)特性,為秋石斛開(kāi)花調(diào)控提供有效的理論依據(jù)。
1.1""材料
秋石斛三亞陽(yáng)光(Dendrobium"hybrid,"Sonia"Hiasakul)采自中國(guó)熱帶農(nóng)業(yè)科學(xué)院熱帶作物品種資源研究所熱帶蘭花資源圃(儋州)。分別采取幼苗期莖(YS)、幼苗期根(YR)、幼苗期葉(YF)、中苗期莖(MS)、中苗期根(MR)、中苗期葉(MF)、成熟期莖(MaS)、成熟期根(MaR)、成熟期葉(MaF)及成熟的花梗(Ped)、花柄(Sta)等部位,同時(shí)采集長(zhǎng)度分別為1、3、5、7、9"cm的花序(1FB、3FB、5FB、5FB、9FB),直徑分別為1、3、5、7、9"mm的花苞(1F、3F、5F、7F、9F),以及直徑為3、5、7"mm花苞和完全開(kāi)放花朵的萼片(3S、5S、7S、FS)、花瓣(3P、5P、7P、FP)、唇瓣(3L、5L、7L、FL)、合蕊柱(3C、5C、7C、FC)等花器官(圖1)。選擇生長(zhǎng)狀態(tài)一致的中苗,在48"h內(nèi)每2"h采集中苗葉片。采樣時(shí)設(shè)置3個(gè)重復(fù),取樣后立刻剪碎,用錫紙包裹后放入液氮中,于-80"℃冰箱保存?zhèn)溆?。所采樣品用于RNA的提取、基因克隆及表達(dá)分析。
1.2""方法
1.2.1""總RNA提取與基因克隆""使用天根RNAprep"Pure"Plant"Plus"Kit試劑盒提取秋石斛RNA,將質(zhì)量合格的RNA逆轉(zhuǎn)錄為cDNA,于–20"℃冰箱保存?zhèn)溆?。以三亞?yáng)光秋石斛轉(zhuǎn)錄組中得到的DenTFL1基因序列為依據(jù),使用Primer"Premier"5軟件設(shè)計(jì)引物(表1),用反轉(zhuǎn)錄的花苞cDNA作為模板進(jìn)行PCR擴(kuò)增。用膠回收試劑盒對(duì)目的片段進(jìn)行回收,利用熱激法將得到的膠回收產(chǎn)物與大腸桿菌感受態(tài)細(xì)胞DH5α連接,挑選單菌落進(jìn)行菌液PCR檢測(cè),并挑選陽(yáng)性菌測(cè)序。
1.2.2""生物信息學(xué)分析""利用ExPasy-ProtParam(https://www.expasy.org/resources/protparam)在線軟件分析蛋白的理化性質(zhì);利用ExPASy-protscale預(yù)測(cè)分析蛋白的親水性;利用WoLF"PSORT(https://"wolfpsort.hgc.jp/)和Cell"ploc2.0(http://www.csbio."sjtu.edu.cn/bioinf/Cell-PLoc-2/)在線軟件預(yù)測(cè)DenTFL1蛋白的亞細(xì)胞定位;利用SOPMA(https://npsa-pbil.ibcp.fr/cgi-bin/npsa_automat.pl?page=npsa_sopma.html)、SWISS-MODEL(https://"swissmodel.expasy.org/interactive)在線軟件預(yù)測(cè)蛋白的二級(jí)結(jié)構(gòu)及三維空間結(jié)構(gòu);利用TMHMM-2.0(https://services.healthtech.dtu.dk/"services/TMHMM-2.0/)在線軟件預(yù)測(cè)蛋白跨膜區(qū);利用SignalP-6.0(https://services.healthtech."dtu.dk/services/SignalP-6.0/)在線軟件預(yù)測(cè)蛋白信號(hào)肽;通過(guò)NCBI數(shù)據(jù)庫(kù)的BLAST工具獲得DenTFL1蛋白的同源序列,并用DNAMAN軟件進(jìn)行比對(duì)分析,使用MEGA-11軟件構(gòu)建系統(tǒng)進(jìn)化樹(shù)。
1.2.3""DenTFL1基因的表達(dá)分析""以三亞陽(yáng)光秋石斛的不同組織為材料分析秋石斛DenTFL1基因的組織表達(dá)特性。使用吐露港的2×Q3"SYBR"qPCR"Master"mix試劑盒,CFX96"Touch儀器進(jìn)行熒光定量PCR檢測(cè)。實(shí)驗(yàn)設(shè)置3次生物學(xué)重復(fù),DenTFL1基因的相對(duì)表達(dá)量使用2???Ct法計(jì)算。DenTFL1基因的熒光定量PCR引物見(jiàn)表1,使用秋石斛β-actin基因作為內(nèi)參[19]。計(jì)算結(jié)果使用Origin"2024軟件制圖。
2.1""DenTFL1基因克隆
以秋石斛花苞cDNA為模板,設(shè)計(jì)特異性引物,PCR成功擴(kuò)增出目的基因DenTFL1(圖2),經(jīng)測(cè)序獲得522"bp的序列。
2.2""DenTFL1蛋白的生物信息學(xué)分析
理化性質(zhì)分析結(jié)果顯示,DenTFL1蛋白包含173個(gè)氨基酸,分子量為19.43"kDa,分子式簡(jiǎn)寫(xiě)為C870H1354N246O249S6,理論等電點(diǎn)(pI)為7.82;帶正電荷的殘基總數(shù)(Arg+Lys)為2個(gè),帶負(fù)電荷的殘基總數(shù)(Asp+Glu)為20個(gè);纈氨酸在氨基酸序列中占比最高(13.3%),其次為精氨酸(9.2%);蛋白不穩(wěn)定系數(shù)達(dá)39.91,推測(cè)其為穩(wěn)定堿性蛋白??傆H水性平均值(GRAVY)為-0.257,推測(cè)DenTFL"1蛋白屬于親水蛋白(圖3)。保守結(jié)構(gòu)域數(shù)據(jù)庫(kù)(CDD)預(yù)測(cè)結(jié)果顯示,DenTFL1蛋白屬于PEBP超家族。SignalP"6.0預(yù)測(cè)結(jié)果顯示,Sec/SPI為0.0004,其它類(lèi)型蛋白占比為0.9996,表示DenTFL1蛋白可能不具有信號(hào)肽。TMHMM"2.0軟件分析該蛋白質(zhì)不含跨膜結(jié)構(gòu)域,推測(cè)該蛋白屬于非分泌性蛋白。使用WoLF"PSORT和Cell-PLoc"2.0在線軟件預(yù)測(cè)結(jié)果均表明DenTFL1蛋白可能定位于細(xì)胞質(zhì)。
DenTFL1蛋白由3種構(gòu)象組成,其中無(wú)規(guī)則卷曲(random"coil)占比最高,為61.85%;其次是延伸鏈(extended"strand),占比23.7%;α-螺旋(alpha"helix)占比僅有14.45%(圖4A)。使用SWISS-MODEL軟件以匹配度最高的水稻PEBP家族Os02g0531600蛋白為模板建模,得到TFL1蛋白三級(jí)結(jié)構(gòu)模型(圖4B),與二級(jí)結(jié)構(gòu)基本一致,DenTF1L蛋白三級(jí)結(jié)構(gòu)中同樣含有較多的無(wú)規(guī)則卷曲。
2.3""DenTFL1蛋白同源序列比對(duì)和系統(tǒng)發(fā)育分析
通過(guò)NCBI數(shù)據(jù)庫(kù)查找其它植物中與DenTFL1蛋白同源的序列,并用DNAMAN軟件對(duì)其進(jìn)行同源性比對(duì),發(fā)現(xiàn)DenTFL1序列與金釵石斛(KAI0496869.1)、球花石斛(KAL0910461.1)、Masdevallia"wendlandiana(QLM02222.1)、文心蘭(AIU44253.1)、香莢蘭(KAG0489005.1)等物種同源基因的氨基酸序列高度相似,同源性分別為96.53%、94.80%、85.55%、87.86%、85.38%(圖5),說(shuō)明可能具有相似功能。系統(tǒng)進(jìn)化樹(shù)顯示,秋石斛DenTFL1與金釵石斛的親緣關(guān)系最近,其次是球花石斛,與高粱,油棕親緣關(guān)系較遠(yuǎn)(圖6)。
2.4""DenTFL蛋白互作網(wǎng)絡(luò)的預(yù)測(cè)與分析
利用STRING軟件對(duì)秋石斛DenTFL1進(jìn)行蛋白質(zhì)互作(protein-protein"interaction,PPI)網(wǎng)絡(luò)構(gòu)建。DenTFL1氨基酸序列與擬南芥AtTFL1相似性較高,同源性為69.1%。借助AtTFL1已知的蛋白互作網(wǎng)絡(luò)對(duì)DenTFL1的蛋白互作調(diào)控機(jī)制進(jìn)行預(yù)測(cè)發(fā)現(xiàn)(圖7),聚類(lèi)系數(shù)為0.891,PPI富集P值為5.57e-05,可能與DenTFL1存在互相作用的蛋白有10個(gè),分別是AT5G63440(0.963)、LFY(0.938)、SOC1(0.931)、AGL24(0.924)、AGL8(0.907)、CAL(0.905)、F6I1.13(0.888)、DECOY(0.875)、AT1G64880(0.866)、VIN3(0.852)。GO富集分析表明,DenTFL1的互作蛋白主要參與花序分生組織特性的維持,胚胎后發(fā)育的正向調(diào)控、花朵發(fā)育的正向調(diào)控等生物過(guò)程。
2.5""DenTFL1基因的表達(dá)特性分析
為探究DenTFL1基因在秋石斛中的表達(dá)特性,本研究對(duì)秋石斛不同發(fā)育階段的不同組織、不同發(fā)育階段的花序、花苞以及不同發(fā)育階段花器官中的基因表達(dá)情況進(jìn)行分析。不同發(fā)育階段的不同組織表達(dá)特性分析結(jié)果表明,DenTFL1基因在秋石斛各發(fā)育階段不同組織中均有表達(dá),在幼苗和成熟苗的莖、花柄中高表達(dá),其次是成熟株的根和幼苗的葉片,中苗的莖、根和葉中的表達(dá)量均較低(圖8)。
花序和花苞的表達(dá)特性分析(圖9)發(fā)現(xiàn),DenTFL1在花序發(fā)育的各個(gè)階段均有表達(dá),在長(zhǎng)度1"cm的花序中的表達(dá)量最高,之后表達(dá)量迅速下降,在長(zhǎng)度3"cm的花序中的表達(dá)量最低,之后表達(dá)量又迅速上升,在長(zhǎng)度5、7、9"cm的花序中均有較高的表達(dá)量。在各個(gè)發(fā)育階段的花苞中,DenTFL1主要在花苞發(fā)育后期高表達(dá),其中在7"mm直徑的花苞中的表達(dá)量最高,其次是9"mm直徑的花苞。
在花器官中,完全開(kāi)放花朵的各個(gè)部位DenTFL1基因表達(dá)量明顯高于3、5、7"mm花苞的花器官。在未成熟時(shí),幾個(gè)階段花苞中萼片的基因表達(dá)量均較高,當(dāng)花苞開(kāi)放時(shí),各個(gè)花器官中基因表達(dá)量上升,明顯高于3、5、7"mm花苞,其中唇瓣的表達(dá)量最高(圖10)。
為分析DenTFL1在48"h周期內(nèi)表達(dá)變化,選取秋石斛中苗葉片部位進(jìn)行表達(dá)分析。DenTFL1在葉片中的晝夜表達(dá)結(jié)果顯示,DenTFL1在凌晨6:00—8:00時(shí),中午12:00—16:00時(shí),晚上18:00—22:00時(shí)的表達(dá)量呈先上調(diào)后下調(diào)的趨勢(shì)(圖11),具有明顯的節(jié)律性。
成花轉(zhuǎn)變是有花植物重要的生長(zhǎng)階段,最佳的開(kāi)花時(shí)期對(duì)于植物在適宜環(huán)境條件下完成生命周期具有重要意義[20]。花是絕大多數(shù)觀賞植物最重要的觀賞部位,開(kāi)花的早晚、開(kāi)花的應(yīng)節(jié)性等都極大地影響觀花花卉的價(jià)值,而通過(guò)花期調(diào)控使觀花花卉早開(kāi)花、應(yīng)節(jié)性開(kāi)花是提高其價(jià)值的有效手段之一,對(duì)開(kāi)花調(diào)控的分子機(jī)制解析是開(kāi)展花期調(diào)控研究的基礎(chǔ)。TFL1基因已被證實(shí)在調(diào)控植物的開(kāi)花時(shí)間及植株結(jié)構(gòu)中扮演重要角色[21]。TFL1是花序分生組織發(fā)育的主要負(fù)調(diào)控因子,可顯著延遲開(kāi)花時(shí)間[22]。蘋(píng)果中的MdTFL1-1和MdTFL1-2在花誘導(dǎo)過(guò)程中表達(dá)迅速降低,在擬南芥中異位表達(dá)會(huì)延遲開(kāi)花時(shí)間[23],矮牽牛中的PhTFL1a/c都導(dǎo)致擬南芥明顯晚花[24];龍眼中的DlTFL1-1和DlTFL1-2導(dǎo)致煙草和擬南芥開(kāi)花延遲[25];在玫瑰中,開(kāi)花抑制因子TFL1同源物的缺失會(huì)改變開(kāi)花季節(jié)性,引起持續(xù)開(kāi)花[26]。由此推測(cè),本研究克隆的秋石斛DenTFL1基因在調(diào)控花期方面也有一定的作用。本研究從秋石斛三亞陽(yáng)光品種中成功分離出DenTFL1基因,其全長(zhǎng)為522"bp,編碼173個(gè)氨基酸。通過(guò)蛋白序列對(duì)比研究發(fā)現(xiàn),DenTFL1基因與金釵石斛(KAI049 6869.1)、球花石斛(KAL0910461.1)中的同源基因親緣關(guān)系較近且蛋白序列的一致性較高,推測(cè)DenTFL1基因在這幾個(gè)物種中的功能具有相似性。利用生物信息學(xué)技術(shù)分析DenTFL1蛋白的基本理化性質(zhì)和二級(jí)結(jié)構(gòu)等,推測(cè)其為穩(wěn)定堿性親水蛋白,且不具有信號(hào)肽和跨膜結(jié)構(gòu)域,屬于非分泌性蛋白。DenTFL1蛋白可能定位于細(xì)胞質(zhì),二級(jí)結(jié)構(gòu)和三級(jí)結(jié)構(gòu)預(yù)測(cè)結(jié)果顯示DenTFL1蛋白有較多的無(wú)規(guī)則卷曲結(jié)構(gòu)。
植物的開(kāi)花受多種途徑調(diào)控,最終整合成一個(gè)復(fù)雜的調(diào)控網(wǎng)絡(luò),其中包括許多開(kāi)花抑制因子和開(kāi)花促進(jìn)因子。在植物幼苗時(shí)期,開(kāi)花抑制因子高表達(dá),抑制植物開(kāi)花,到了中苗期,開(kāi)花促進(jìn)因子開(kāi)始高表達(dá),抑制開(kāi)花抑制因子的表達(dá),使開(kāi)花抑制因子表達(dá)量降低,從而完成成花轉(zhuǎn)換,最終開(kāi)花[27]。而TFL1是一個(gè)開(kāi)花抑制因子,秋石斛DenTFL1的時(shí)空發(fā)育表達(dá)特性分析表明,其在幼苗期的莖中具有很高的表達(dá)量,而到了中苗之后,表達(dá)量明顯下降,與開(kāi)花抑制因子在植物生長(zhǎng)發(fā)育過(guò)程中的表達(dá)特性相一致。類(lèi)似的表達(dá)特性在二球懸鈴木(Platanus"acerifolia)[28]、巴西橡膠樹(shù)(Hevea"brasiliensis)[29]、三花龍膽(Gentiana"triflora)[15]等植物中同樣存在。表明秋石斛TFL1的同源基因DenTFL1同樣具有抑制秋石斛開(kāi)花的功能。
龍眼DlTFL1-1、DlTFL1-2在擬南芥過(guò)表達(dá)中出現(xiàn)了花序分支增多的表型,并且轉(zhuǎn)基因擬南芥中的AtAP1、AtFT、AtLFY基因表達(dá)量顯著下調(diào)[25]。TFL1及其同源基因除了具有調(diào)控開(kāi)花的功能之外,在很多物種中也報(bào)道了其參與調(diào)控植物形態(tài)建成及花器官發(fā)育的功能,如與AGAMOUS基因功能互作調(diào)控紫花苜蓿的花器官分化和花序發(fā)育[30];與AGAMOUS、LEAFY共同互作調(diào)控?cái)M南芥花分生組織的分化[31],通過(guò)轉(zhuǎn)錄抑制調(diào)控?cái)M南芥的開(kāi)花時(shí)間和花序發(fā)育[12];與FT互作調(diào)控森林草莓(Fragaria"vesca)花序形態(tài)建成[32]。蛋白互作網(wǎng)絡(luò)的預(yù)測(cè)結(jié)果顯示,DenTFL1蛋白與LFY、AGL24、AGL8等存在相互作用,并且GO富集分析表明這些互作蛋白主要參與花序分生組織特性的維持,花朵發(fā)育的正向調(diào)控等生物過(guò)程。本研究發(fā)現(xiàn)DenTFL1在花序、花苞發(fā)育的各個(gè)階段以及花器官發(fā)育的各個(gè)階段均有很高的表達(dá)量,表明DenTFL1極有可能也參與了秋石斛花序和花器官分化和發(fā)育的調(diào)控,但仍需通過(guò)進(jìn)一步的研究驗(yàn)證。
研究表明,TFL1除了能感受年齡途徑、自主途徑以及春化途徑的開(kāi)花信號(hào)調(diào)控植物開(kāi)花進(jìn)程之外,也能感受光周期途徑的開(kāi)花信號(hào)調(diào)控開(kāi)花進(jìn)程[27],如森林草莓的FvTFL1突變將導(dǎo)致原本長(zhǎng)日照抑制開(kāi)花,短日照促進(jìn)開(kāi)花的植株在長(zhǎng)日照條件下出現(xiàn)早花的表型[33],通過(guò)整合溫度信號(hào)和光周期信號(hào)來(lái)抑制森林草莓的開(kāi)花[34],通過(guò)感受溫度和光周期信號(hào)調(diào)控黃瓜的有限生長(zhǎng)發(fā)育[35]等。本研究中,DenTFL1晝夜節(jié)律表達(dá)特性分析發(fā)現(xiàn),其具有很明顯的晝夜表達(dá)規(guī)律,表明DenTFL1可以感受晝夜的光周期信號(hào),從而誘導(dǎo)其表達(dá)量的變化,說(shuō)明DenTFL1可以通過(guò)感受光周期的信號(hào)調(diào)控秋石斛的開(kāi)花進(jìn)程。
本研究克隆了秋石斛DenTFL1基因,對(duì)其進(jìn)行生物信息學(xué)和表達(dá)特性分析,為全面深入解析DenTFL1生物學(xué)功能及作用機(jī)制提供參考,為后續(xù)深入解析其在秋石斛花期調(diào)控機(jī)制提供理論基礎(chǔ)。
參考文獻(xiàn)
[1]"尹俊梅,"陳金花,"楊光穗,"易雙雙."海南熱帶花卉產(chǎn)業(yè)科技創(chuàng)新發(fā)展現(xiàn)狀及建議[J]."農(nóng)業(yè)科技管理,"2016,"35(5):"57-60.YIN"J"M,"CHEN"J"H,"YANG"G"S,"YI"S"S."Discussions"on"current"situation"and"suggestions"of"tropical"flower"industrial"scientific"and"technological"innovation"in"Hainan"province[J]."Management"of"Agricultural"Science"and"Technology,"2016,"35(5):"57-60."(in"Chinese)
[2]"李志晴,"李亞梅,"李崇暉,"尹俊梅."秋石斛胚性愈傷組織誘導(dǎo)及再生體系的建立[J]."熱帶作物學(xué)報(bào),"2024,"45(6):"1175-1183.LI"Z"Q,"LI"Y"M,"LI"C"H,"YIN"J"M."Establishment"of"embryogenic"callus"induction"and"regeneration"system"for"Phalaenopsis-hybrid"Dendrobium[J]."Chinese"Journal"of"Tropical"Crops,"2024,"45(6):"1175-1183."(in"Chinese)
[3]"NAMBIAR"N,"SIANG"T"C,"MAHMOOD"M."Effect"of"6-benzylaminopurine"on"flowering"of"a"'Dendrobium'"orchid[J]."Australian"Journal"of"Crop"Science,"2012,"2(6):"225-231.
[4]"張東雪,"廖易,"陸順教,"李崇輝,"廉華,"尹俊梅."外施TDZ對(duì)秋石斛‘紅霞’生長(zhǎng)與開(kāi)花的影響[J]."北方園藝,"2017(4):"46-50.ZHANG"D"X,"LIAO"Y,"LU"S"J,"LI"C"H,"LIAN"H,"YIN"J"M."Effect"of"spraying"TDZ"on"growth"and"flowering"of"Dendrobium"‘Nopporn"pink’[J]."Northern"Horticulture,"2017(4):"46-50."(in"Chinese)
[5]"BELARMINO"M"M,"MII"M."Agrobacterium-mediated"genetic"transformation"of"a"phalaenopsis"orchid[J]."Plant"Cell"Reports,"2000,"19(5):"435-442.
[6]"蔣園園."枇杷成花時(shí)間調(diào)控的分子機(jī)制研究[D]."廣州:華南農(nóng)業(yè)大學(xué),"2019.JIANG"Y"Y."Molecular"mechanism"study"on"the"loquat"flowering"time"regulation[D]."Gguangzhou:"South"China"Agricultural"University,"2019."(in"Chinese)
[7]"WICKLAND"D"P,"HANZAWA"Y."The"FLOWERING"LOCUS"T/TERMINAL"FLOWER"1"gene"family:"functional"evolution"and"molecular"mechanisms[J]."Molecular"Plant,"2015,"8(7):"983-997.
[8]"王云夢(mèng),"宋賀云,"劉娟,"章明華,"楊美."FT和TFL1基因調(diào)控植物開(kāi)花的分子機(jī)理[J]."植物生理學(xué)報(bào),"2022,"58(1):"77-90.WANG"Y"M,"SONG"H"Y,"LIU"J,"ZHANG"M"H,"YANG"M."Molecular"mechanism"of"FT"and"TFL1"genes"on"regulation"of"plant"flowering[J]."Plant"Physiology"Journal,"2022,"58(1):"77-90."(in"Chinese)
[9]"KARLGREN"A,"GYLLENSTRAND"N,"K?LLMAN"T,"SUNDSTR?M"J"F,"MOORE"D,"LASCOUX"M,"LAGERCRANTZ"U."Evolution"of"the"PEBP"gene"family"in"plants:"functional"diversification"in"seed"plant"evolution[J]."Plant"Physiology,"2011,"156(4):"1967-1977.
[18]"KALIA"D,"KUMAR"J"J"R."Analysis"of"PEBP"genes"in"saffron"identifies"a"Flowering"Locus"T"homologue"involved"in"flowering"regulation[J]."Journal"of"Plant"Growth"Regulation,"2022,"42(21):"2486-2505.
[19]"侯天澤,"易雙雙,"張志群,"王健,"李崇暉."秋石斛RT-qPCR內(nèi)參基因的篩選與驗(yàn)證[J]."園藝學(xué)報(bào),"2022,"49(11):"2489-2501.HOU"T"Z,"YI"S"S,"ZHANG"Z"Q,"WANG"J,"LI"C"H."Selection"and"validation"of"reference"genes"for"RT-qPCR"in"Phalaenopsis"type"Dendrobium"hybrid[J]."Acta"Horticulturae"Sinica,"2022,"49(11):"2489-2501."(in"Chinese)
[20]"SU"J"S,"JIANG"J"F,"ZHANG"F,"LIU"Y,"DING"L,"CHEN"S,"CHEN"F."Current"achievements"and"future"prospects"in"the"genetic"breeding"of"chrysanthemum:"a"review[J]."Horticulture"Research,"2019,"6:"109.
[21]"JIN"S"Y,"NASIM"Z,"SUSILA"H,"AHN"J"H."Evolution"and"functional"diversification"of"FLOWERING"LOCUS"T/TERMINAL"FLOWER"1"family"genes"in"plants[J]."Seminars"in"Cell"amp;"Developmental"Biology,"2021,"109:"20-30.
[22]"YOO"S"J,"CHUNG"K"S,"JUNG"S"H,"YOO"S"Y,"LEE"J"S,"AHN"J"H."Brother"of"ft"and"TFL1"(BFT)"has"TFL1-like"activity"and"functions"redundantly"with"TFL1"in"inflorescence"meristem"development"in"Arabidopsis[J]."The"Plant"Journal,"2010,"63(2):"241-253.
[23]"ZUO"X,"XIANG"W,"ZHANG"L,"GAO"C,"AN"N,"XING"L,"MA"J"J,"ZHAO"C"P,"ZHANG"D."Identification"of"apple"TFL1-interacting"proteins"uncovers"an"expanded"flowering"network[J]."Plant"Cell"Reports,"2021,"40(12):"2325-2340.
[24]"烏蘭."矮牽牛FT/TFL1基因家族分析及其在開(kāi)花調(diào)控中的功能研究[D]."武漢:華中農(nóng)業(yè)大學(xué),"2020.WU"L."Genome-wide"analysis"of"FT/TFL1"family"genesand"the"function"in"flowering"regulation"of"Petunia"hybrida[D]."Wuhan:"Huazhong"Agricultural"University,"2020."(in"Chinese)
[25]"張藝勇,"彭媛,"付志遠(yuǎn),"曾黎輝."龍眼TFL1同源基因在擬南芥和煙草中過(guò)量表達(dá)的功能研究[J]."園藝學(xué)報(bào),"2019,"46(10):"1936-1946.ZHANG"Y"Y,"PENG"Y,"FU"Z"Y,"ZENG"L"H."Functional"analysis"of"Longan"TFL1"homologous"genes"by"over-expr ession"in"Arabidopsis"thaliana"and"tobacco[J]."Acta"Horticulturae"Sinica","2019,"46(10):"1936-1946."(in"Chinese)
[26]"IWATA"H,"GASTON"A,"REMAY"A,"THOUROUDE"T,"JEAUFFRE"T,"KAWAMURA"K,"SAINT"OYANT"L"H,"ARAKI"T,"DENOYES"B,"FOUCHER"F."The"TFL1"homologue"KSN"is"a"regulator"of"continuous"flowering"in"rose"and"strawberry[J]."The"Plant"Journal,"2011,"69(1):"116-125.
[27]"BLüMEL"M,"DALLY"N,"JUNG"C."Flowering"time"regulation"in"crops-what"did"we"learn"from"Arabidopsis?[J]."Current"Opinion"in"Biotechnology,"2015,"32:"121-129.
[28]"ZHANG"S"S,"ZHOU"Q,"YANG"X"Y,"WANG"J"Q,"JIANG"J,"SUN"M"M,"LIU"Ynbsp;J,"NIE"C,"BAO"M"Z,"LIU"G"F."Functional"characterization"of"three"TERMINAL"FLOWER"1-like"genes"from"Platanus"acerifolia[J]."Plant"Cell"Reports,"2023,"42(6):"1071-1088.
[29]"BI"Z"H,"TAHIR"A"T,"HUANG"H,"HUA"Y"W."Cloning"and"functional"analysis"of"five"TERMINAL"FLOWER"1/CENTRORADIALIS-like"genes"from"Hevea"brasiliensis[J]."Physiologia"Plantarum,"2019,"166(2):"612-627.
[30]"ZHU"B"T,"LI"H,"HOU"Y"F,"ZHANG"P"C,"XIA"X"Z,"WANG"N,"WNAG"H,"MYSORE"K"S,"WEM"J"Q,"PEI"Y"X,"NIU"L"F,"LIN"H."Agamous"and"terminal"flower"controls"floral"organ"identity"and"inflorescence"development"in"Medicago"truncatula[J]."Journal"of"Integrative"Plant"Biology,"2019,"61(8):"917-923.
[31]"PARCY"F,"BOMBLIES"K,"WEIGEL"D."Interaction"of"LEAFY,"AGAMOUS"and"TERMINAL"FLOWER1"in"maintaining"floral"meristem"identity"in"Arabidopsis[J]."Development,"2002,"129(10):"2519-2527.
[32]"LEMBINEN"S,"CIESLAK"M,"ZHANG"T,"MACKENZIE"K,"ELOMAA"P,"PRUSINKIEWICZ"P,"HYT?NEN"T."Diversity"of"woodland"strawberry"inflorescences"arises"from"heterochrony"regulated"by"TERMINAL"FLOWER"1"and"FLOWERING"LOCUS"T[J]."The"Plant"Cell,"2023,"35(6):"2079-2094.
[33]"KOSKELA"E"A,"MOUHU"K,"ALBANI"M"C,"KUROKURA"T,"RANTANEN"M,"SARGENT"D"J,"BATTEY"N"H,"COUPLAND"G,"ELOMAA"P,"HYT?NEN"T."Mutation"in"TERMINAL"FLOWER1"reverses"the"photoperiodic"requirement"for"flowering"in"the"wild"strawberry"Fragaria"vesca[J]."Plant"Physiology,"2012,"159(3):"1043-1054.
[34]"RANTANEN"M,"KUROKURA"T,"JIANG"P,"MOUHU"K,"HYT?NEN"T."Strawberry"homologue"of"terminal"flower1"integrates"photoperiod"and"temperature"signals"to"inhibit"flowering[J]."The"Plant"Journal,"2015,"82(1):"163-173.
[35]"WEN"H,"PAN"J,"CHEN"Y,"CHEN"G"Q,"DU"H,"ZHANG"L"Y,"ZHANG"K"Y,"HE"H,"WANG"G,"CAI"R,"PAN"J"S."TERMINAL"FLOWER"1"and"TERMINAL"FLOWER"1d"respond"to"temperature"and"photoperiod"signals"to"inhibit"determinate"growth"in"cucumber[J]."Plant,"Cell"amp;"Environment,"2021,"44(8):"2580-2592.