[摘要]"目的"分析非小細(xì)胞肺癌(non-small"cell"lung"cancer,NSCLC)中Fas活化激酶結(jié)構(gòu)域蛋白(fas-activated"kinase"domain-containing"proteins,F(xiàn)ASTKDs)的表達(dá)及與預(yù)后的相關(guān)性價(jià)值。方法"通過(guò)分析癌癥體細(xì)胞突變數(shù)據(jù)庫(kù)中影響FASTKDs的體細(xì)胞突變情況。分析不同肺癌病理亞型中FASTKDs的mRNA表達(dá)水平。運(yùn)用Kaplan-Meier生存分析評(píng)估FASTKDs在非小細(xì)胞肺癌樣本中特異性表達(dá)的預(yù)測(cè)意義。采用實(shí)時(shí)熒光定量聚合酶鏈反應(yīng)(real-time"quantitative"polymerase"chain"reaction,RT-qPCR)和Western"blot法分析FASTKDs在人NSCLC細(xì)胞中的mRNA和蛋白質(zhì)表達(dá)情況。結(jié)果"與正常肺組織相比,肺腺癌(lung"adenocarcinoma,LUAD)組織中的所有FASTKDs均為高表達(dá)(Plt;0.05),而肺鱗癌組織中只有FASTKD1、FASTKD3、FASTKD4和FASTKD5表達(dá)升高(Plt;0.05)。在所有NSCLC及LUAD病理亞型患者中,只有FASTKD1和FASTKD3"mRNA表達(dá)水平升高與患者較高的總體生存期(overall"survival,OS)相關(guān)(Plt;0.05),但在NSCLC患者中FASTKD2和FASTKD4"mRNA表達(dá)水平升高與患者OS的降低相關(guān)(Plt;0.05)。與正常人支氣管上皮細(xì)胞相比,人NSCLC細(xì)胞中FASTKD1-5的mRNA和蛋白表達(dá)量增加(Plt;0.05)。結(jié)論"不同的FASTKDs表達(dá)情況與NSCLC患者的預(yù)后相關(guān),是NSCLC的潛在腫瘤標(biāo)志物。
[關(guān)鍵詞]"Fas活化激酶結(jié)構(gòu)域蛋白;非小細(xì)胞肺癌;總體生存期
[中圖分類號(hào)]"R734.2""""""[文獻(xiàn)標(biāo)識(shí)碼]"A""""[DOI]"10.3969/j.issn.1673-9701.2025.05.006
Potential"significance"of"FASTKDs"in"prognosis"of"non-small"cell"lung"cancer
GU"Chao,"YANG"Qi
Department"of"Respiratory"Medicine,"the"First"Hospital"of"Jiaxing,"Jiaxing"314000,"Zhejiang,"China
[Abstract]"Objective"To"analyze"the"correlation"between"the"expression"of"fas-activated"kinase"domain-containing"proteins"(FASTKDs)"and"the"prognosis"of"non-small"cell"lung"cancer"(NSCLC)"and"its"predictive"value."Methods"By"analyzing"the"somatic"mutation"in"Catalog"of"Somatic"Mutations"in"Cancer"database,"the"effect"of"FASTKDs"was"analyzed."The"mRNA"expression"level"of"FASTKDs"in"different"pathological"subtypes"of"lung"cancer"was"analyzed"retrospectively."Kaplan-Meier"survival"analysis"was"used"to"evaluate"the"predictive"significance"of"FASTKDs"specific"expression"in"NSCLC"samples.Real-time"quantitative"polymerase"chain"reaction"(RT-qPCR)"and"Western"blot"were"used"to"verify"the"mRNA"and"protein"expression"of"FASTKDs"in"human"NSCLC"cells"in"vitro."Results"FASTKDs"in"lung"adenocarcinoma"(LUAD)"were"highly"expressed(Plt;0.05),"while"only"FASTKD1,"FASTKD3,"FASTKD4"and"FASTKD5"in"lung"squamous"cell"carcinoma"were"highly"expressed"(Plt;0.05)."In"all"patients"with"NSCLC"and"LUAD"pathological"subtypes,"only"the"increased"expression"levels"of"FASTKD1"and"FASTKD3"mRNA"were"significantly"correlated"with"the"higher"overall"survival"(OS)"(Plt;0.05),"but"the"increased"expression"levels"of"FASTKD2"and"FASTKD4"mRNA"in"NSCLC"patients"were"correlated"with"the"decreased"OS"(Plt;0.05)."Compared"with"normal"human"bronchial"epithelial"cells,"the"mRNA"and"protein"expression"of"FASTKD1-5"in"human"NSCLC"cells"increased"significantly"(Plt;0.05)."Conclusion"Different"expression"of"FASTKDs"is"related"to"the"prognosis"of"NSCLC"patients"and"is"a"potential"tumor"marker"of"NSCLC.
[Key"words]"Fas-activated"kinase"domain-containing"proteins;"Non-small"cell"lung"cancer;"Overall"survival
肺癌是全球癌癥相關(guān)死亡的主要原因,小細(xì)胞肺癌(small"cell"lung"cancer,SCLC)和非小細(xì)胞肺癌(non-small"cell"lung"cancer,NSCLC)分別占肺癌類型的15%和85%[1-2]。肺癌的治療已有顯著進(jìn)步,但患者5年總生存率仍很低。Fas活化激酶結(jié)構(gòu)域蛋白(fas-activated"kinase"domain-containing"proteins,F(xiàn)ASTKDs)家族成員對(duì)轉(zhuǎn)錄后線粒體中基因表達(dá)的調(diào)節(jié)非常重要。Fas活化激酶及其同源FASTKD1~5是結(jié)構(gòu)相似的RNA結(jié)合蛋白,在控制線粒體RNA方面具有不同的功能,包括信使RNA的加工、成熟、核糖體裝配和翻譯[3]。FASTKDs在胰腺癌、乳腺癌和結(jié)直腸癌等惡性腫瘤中有較多研究,但在肺癌中研究甚少[4]。研究表明FASTKD4在肺癌組織中的表達(dá)顯著增加,通過(guò)干擾DNA損傷誘導(dǎo)轉(zhuǎn)錄物3、小窩蛋白-1和核糖核苷酸還原酶調(diào)節(jié)亞基M2的調(diào)控而在肺癌的發(fā)生中發(fā)揮作用[5]。然而,F(xiàn)ASTKDs不同表達(dá)水平在NSCLC患者預(yù)后預(yù)測(cè)方面未見(jiàn)報(bào)道。本研究探討FASTKDs在NSCLC中的表達(dá)及與預(yù)后的相關(guān)性預(yù)測(cè)價(jià)值,為肺癌預(yù)后腫瘤標(biāo)志物研究提供參考。
1""資料與方法
1.1""基因獲取與分析
從癌癥體細(xì)胞突變數(shù)據(jù)庫(kù)(Catalogue"of"Somatic"Mutations"in"Cancer,COSMIC)官方網(wǎng)站(https://"cancer.sanger.ac.uk/cosmic/)下載FASTKDs在基因突變和融合、基因組重排及拷貝數(shù)變化等的公共數(shù)據(jù)信息及臨床病理數(shù)據(jù)[6]。共有3168例肺癌樣本納入研究,其中NSCLC樣本1925例,肺腺癌(lung"adenocarcinoma,LUAD)樣本719例,肺鱗癌(lung"squamous"cell"carcinoma,LUSC)樣本524例。通過(guò)Oncomine(https://www.oncomine.org/)分析FASTKDs"mRNA在肺癌不同病理亞型和正常組織中的差異性表達(dá)[7]。采用Kaplan-Meier分析評(píng)估FASTKD1~5在NSCLC標(biāo)本中表達(dá)水平與患者生存的預(yù)測(cè)價(jià)值。采用Graphpad"Prism"9.0軟件繪制生存曲線。
1.2""細(xì)胞培養(yǎng)
正常人支氣管上皮細(xì)胞系(BEAS-2B細(xì)胞)和人NSCLC細(xì)胞系(H1299細(xì)胞)購(gòu)自美國(guó)ATCC公司。在37℃、5%"CO2條件下,采用Dulbecco改良的Eagle培養(yǎng)基培養(yǎng)細(xì)胞。
1.3""實(shí)時(shí)熒光定量聚合酶鏈反應(yīng)與Western"blot法檢測(cè)
采用Trizol法提取BEAS-2B細(xì)胞和H1299細(xì)胞的總RNA,根據(jù)GoScript反轉(zhuǎn)錄系統(tǒng)利用總RNA反轉(zhuǎn)錄成cDNA。實(shí)時(shí)熒光定量聚合酶鏈反應(yīng)(real-time"quantitative"polymerase"chain"reaction,RT-qPCR)檢測(cè)FASTKD1~5"mRNA的相對(duì)表達(dá)量,以β-actin作為內(nèi)參基因。通過(guò)2?ΔΔCt分析RT-qPCR數(shù)據(jù)獲得相對(duì)基因表達(dá)差異。實(shí)驗(yàn)重復(fù)3次。FASTKD1~5基因引物序列見(jiàn)表1。
提取BEAS-2B細(xì)胞和H1299細(xì)胞的總蛋白,將相同量的20"μg蛋白在100℃下加熱10min變性,在8%十二烷基硫酸鈉-聚丙烯酰胺中電泳分離。將蛋白電轉(zhuǎn)至聚偏氟乙烯(polyvinylidene"fluoride,PVDF)膜上后置于TBS-T中,在搖床上室溫孵育封閉非特異結(jié)合位點(diǎn)。將1:1000稀釋的抗FASTKD1~5一抗在4℃下與PVDF膜孵育過(guò)夜。后將PVDF膜與1:2000稀釋的辣根過(guò)氧化物酶二抗室溫孵育1"h。最后采用UVP-GDS8000凝膠成像分析系統(tǒng)掃描并攝像,圖像灰度分析。實(shí)驗(yàn)重復(fù)3次。將各目的蛋白的吸光度值與β-actin內(nèi)參條帶吸光度值的比值作為各蛋白的相對(duì)表達(dá)量。
1.4""統(tǒng)計(jì)學(xué)方法
采用Graphpad"Prism"9.0統(tǒng)計(jì)學(xué)軟件對(duì)數(shù)據(jù)進(jìn)行處理分析,NSCLC中FASTKD1~5基因差異性表達(dá)與患者預(yù)后的關(guān)系采用log-rank檢驗(yàn)。Plt;0.05為差異有統(tǒng)計(jì)學(xué)意義。
2""結(jié)果
2.1""不同F(xiàn)ASTKDs"mRNA在肺癌病理亞型中的表達(dá)差異比較
肺癌組織標(biāo)本中沒(méi)有檢測(cè)到易位、缺失、插入,COSMIC數(shù)據(jù)庫(kù)中FASTKDs基因的序列或拷貝數(shù)沒(méi)有明顯的改變,表明突變穩(wěn)定。與正常肺組織比較,LUAD組織中的所有FASTKDs均為高表達(dá)(Plt;0.05),而LUSC組織中只有FASTKD1、FASTKD3、FASTKD4和FASTKD5表達(dá)升高(Plt;0.05)。
2.2""FASTKDs的差異表達(dá)與NSCLC患者預(yù)后的關(guān)系分析
在所有NSCLC及LUAD病理亞型患者中,只有FASTKD1"mRNA和FASTKD3"mRNA表達(dá)水平升高與患者較高的總體生存期(overall"survival,OS)顯著相關(guān)。同時(shí),在NSCLC患者中FASTKD2"mRNA和FASTKD4"mRNA表達(dá)水平的升高與患者OS的降低相關(guān)。在LUAD病理亞型患者中,F(xiàn)ASTKD4"mRNA表達(dá)升高與OS降低顯著相關(guān),見(jiàn)圖1。
2.3""FASTKDs"mRNA表達(dá)水平和蛋白表達(dá)
與BEAS-2B細(xì)胞比較,H1299細(xì)胞中FASTKD1~5的mRNA表達(dá)水平和蛋白表達(dá)量顯著增加(Plt;0.05),見(jiàn)圖2、圖3。
3""討論
肺癌因其高發(fā)病率和高死亡率給患者和社會(huì)帶來(lái)巨大負(fù)擔(dān)[8]。Ghezzi等[9]研究表明線粒體中FASTKDs家族成員FASTKD2,突變是介導(dǎo)人類線粒體相關(guān)疾病的原因。研究證實(shí)FASTK蛋白位于線粒體基質(zhì)中,并調(diào)節(jié)線粒體中基因的表達(dá)[10]。在人類線粒體DNA中有37個(gè)基因是氧化磷酸化所必需的,這些基因表達(dá)的變化與疾病和衰老過(guò)程有關(guān)[11]。FASTKD1和線粒體DNA間存在部分重疊,表明FASTKD1和線粒體RNAs在轉(zhuǎn)錄后不久可相互作用[12-13]。在腹膜、肺和食管的惡性腫瘤中,F(xiàn)ASTKD1表達(dá)水平與復(fù)發(fā)和侵襲的可能性間存在關(guān)聯(lián)[14]。
本研究表明在NSCLC和LUAD患者中FASTKD1"mRNA表達(dá)水平升高與患者較高的OS有顯著相關(guān)性。FASTKD2在線粒體呼吸和RNA加工中具有獨(dú)特功能,并與線粒體轉(zhuǎn)錄物相互作用[15]。FASTKD2與線粒體16S"rRNA結(jié)合,這對(duì)線粒體39S核糖體亞單位的組裝至關(guān)重要[4]。本研究顯示FASTKD2在LUAD患者中呈高表達(dá),但與患者OS間沒(méi)有明顯的相關(guān)性。然而,F(xiàn)ASTKD2"mRNA表達(dá)量增加與NSCLC患者的OS降低有關(guān)。FASTKD3是線粒體氧化磷酸化的必需蛋白,同時(shí)在控制各種分子的mRNA穩(wěn)定性方面具有重要功能[16]。本研究在LUAD和LUSC患者中FASTKD3呈高表達(dá)。但在所有NSCLC及LUAD病理亞型患者中,F(xiàn)ASTKD3"mRNA表達(dá)水平升高與患者較高的OS顯著相關(guān)。FASTKD4是轉(zhuǎn)化生長(zhǎng)因子β-調(diào)節(jié)因子4,是線粒體RNA功能的重要調(diào)節(jié)因子,與多種類型的腫瘤有關(guān)[15]。本研究在LUAD、LUSC和NSCLC患者組織中FASTKD4高表達(dá)。但是,在NSCLC患者中FASTKD4"mRNA表達(dá)水平的升高與患者OS的降低相關(guān)。FASTKD5調(diào)節(jié)幾乎所有線粒體編碼的mRNAs的豐度[15]。本研究在LUAD和LUSC患者組織中FASTKD5"mRNA表達(dá)增加。FASTKD5在體外H1299細(xì)胞中呈高表達(dá)。然而,F(xiàn)ASTKD5的表達(dá)和NSCLC預(yù)后間無(wú)相關(guān)性。
綜上,NSCLC患者中FASTKD2"mRNA表達(dá)的增加有可能作為降低OS的預(yù)后標(biāo)志。盡管本研究證實(shí)人H1299細(xì)胞中FASTKD1~5的mRNA和蛋白表達(dá)顯著增高,但FASTKDs表達(dá)與NSCLC預(yù)后相關(guān)的潛在分子機(jī)制需進(jìn)一步研究。
利益沖突:所有作者均聲明不存在利益沖突。
[參考文獻(xiàn)]
[1] Sung"H,"Ferlay"J,"Siegel"R"L,"et"al."Global"Cancer"Statistics"2020:"GLOBOCAN"estimates"of"incidence"and"mortality"worldwide"for"36"cancers"in"185"countries[J]."CA"Can"J"Clin,"2021,"71(3):"209–249.
[2] The"Lancet."Lung"cancer:"Some"progress,"but"still"a"lot"more"to"do[J]."Lancet,"2019,"394(10212):"1880.
[3] Simarro"M,"Gimenez-Cassina"A,"Kedersha"N,"et"al."Fast"kinase"domain-containing"protein"3"is"a"mitochondrial"protein"essential"for"cellular"respiration[J]."Biochem"Biophys"Res"Commun,"2010,"401(3):"440–446.
[4] Antonicka"H,"Shoubridge"E"A."Mitochondrial"RNA"granules"are"centers"for"posttranscriptional"RNA"processing"and"ribosome"biogenesis[J]."Cell"Rep,"2015,"10(6):"920–932.
[5] Wang"A"S,"Zhao"C"L,"Liu"X"G,"et"al."Knockdown"of"TBRG4"affects"tumorigenesis"in"human"H1299"lung"cancer"cells"by"regulating"DDIT3,"CAV1"and"RRM2[J]."Oncol"Lett,"2018,"15(1):"121–128.
[6] Wang"F,"Zhang"Z,"Mao"M,"et"al."COSMIC-based"mutation"database"enhances"identification"efficiency""of"HLA-I"immunopeptidome[J]."J"Transl"Med,"2024,"22(1):"144.
[7] Hu"J,"Qiu"D,"Yu"A,"et"al."YTHDF1"is"a"potential"pan-cancer"biomarker"for"prognosis"and"immunotherapy[J]."Front"Oncol,"2021,"11:"607224.
[8] Hendriks"L"E"L,"Remon"J,"Faivre-Finnnbsp;C,"et"al."Non-small-cell"lung"cancer[J]."Nat"Rev"Dis"Primers,"2024,"10(1):"71.
[9] Ghezzi"D,"Saada"A,"D’Adamo"P,"et"al."FASTKD2"nonsense"mutation"in"an"infantile"mitochondrial"enceph-"alomyopathy"associated"with"cytochrome"C"oxidase"deficiency[J]."Am"J"Human"Genet,"2008,"83(3):"415–423.
[10] Castello"A,"Fischer"B,"Eichelbaum"K,"et"al."Insights"into"RNA"biology"from"an"atlas"of"mammalian"mRNA-binding"proteins[J]."Cell,"2012,"149(6):"1393–1406.
[11] Wallace"D"C."Mitochondrial"genetics:"A"paradigm"for"aging"and"degenerative"diseases[J]."Science,"1992,"256(5057):"628–632.
[12] Boehm"E,"Zaganelli"S,"Maundrell"K,"et"al."FASTKD1"and"FASTKD4"have"opposite"effects"on"expression"of"specific"mitochondrial"RNAs,"depending"upon"their"endonuclease-like"RAP"domain[J]."Nucleic"Acid"Res,"2017,"45(10):"6135–6146.
[13] Han"S,"Udeshi"N"D,"Deerinck"T"J,"et"al."Proximity"biotinylation"as"a"method"for"mapping"proteins"associated"with"mtDNA"in"living"cells[J]."Cell"Chem"Biol,"2017,"24(3):"404–414.
[14] Magraner-Pardo"L,"Gobelli"D,"de"la"Fuente"M"A,"et"al."Systematic"analysis"of"FASTK"gene"family"alterations"in"cancer[J]."Int"J"Mol"Sci,"2021,"22(21):"11337.
[15] Ramasubramanian"A,nbsp;Paramasivam"A,"Ra"mani"P."FASTK"family"of"genes"linked"to"cancer[J]."Bioinformation,"2022,"18(3):"206–213.
[16] Boehm"E,"Zornoza"M,"Jourdain"A"A,"et"al.""Role"of"FAST"kinase"domains"3"(FASTKD3)"in"post-"transcriptional"regulation"of"mitochondrial"gene"expression[J]."J"Biol"Chem,"2016,"291(50):"25877–25887.
(收稿日期:2024–10–28)
(修回日期:2024–12–23)