摘""要:蔗糖磷酸合酶(sucrose"phosphate"synthase,SPS)在蔗糖合成過程中起重要作用,研究榴蓮SPS家族的生物學(xué)功能有助于提升榴蓮果實品質(zhì)。本研究在榴蓮基因組中查找出10個榴蓮SPS成員,分別命名為DzSPS1~DzSPS10,通過研究表明,其平均疏水系數(shù)小于0,等電點在5.70~6.68之間,推測為親水酸性蛋白,亞細胞定位預(yù)測顯示其主要集中在細胞膜和細胞核上。基因家族保守基序分析發(fā)現(xiàn)每個SPS"motif的數(shù)量和分布有差異,但均含有motif"3,可見motif"3是榴蓮SPS基因家族重要的保守結(jié)構(gòu)域?;蚪Y(jié)構(gòu)分析發(fā)現(xiàn),榴蓮SPS結(jié)構(gòu)相似,含有8~15個外顯子,7~13個內(nèi)含子。系統(tǒng)發(fā)育樹顯示,榴蓮SPS家族可分為2個亞族,亞類Ⅱ數(shù)量多達9個,亞類Ⅰ有1個,與可可樹、柑橘等園藝果樹的SPS相比,榴蓮SPS與擬南芥SPS、水稻SPS親緣關(guān)系更近。榴蓮SPS中有7個成員空間結(jié)構(gòu)相似度較高,二級結(jié)構(gòu)多為α-螺旋和無規(guī)則卷曲。順式作用元件分析表明,榴蓮SPS可能較易受光、低溫、干旱、赤霉素等響應(yīng)元件的誘導(dǎo)表達。檢測到榴蓮果實中可溶性糖的主要成分為蔗糖、果糖和葡萄糖,蔗糖含量顯著高于果糖和葡萄糖,且不同品種間存在顯著差異。熒光定量分析發(fā)現(xiàn),不同品種榴蓮的SPS表達水平存在顯著差異,其中DzSPS3和DzSPS7在不同品種中的表達規(guī)律與總糖含量的變化一致,推測DzSPS3和DzSPS7可能是糖分積累的關(guān)鍵成員。本研究通過分析榴蓮SPS結(jié)構(gòu)和理化性質(zhì),探究不同品種榴蓮SPS的積累特點,為進一步探究SPS家族在榴蓮中的生物學(xué)功能提供參考。
關(guān)鍵詞:榴蓮;蔗糖磷酸合酶(SPS);生物信息學(xué);基因表達中圖分類號:S667.9""""""文獻標志碼:A
Genome-wide"Identification"and"Expression"Analysis"of"Sucrose"Phosphate"Synthase"Gene"in"Durio"zibethinus"Murr.
ZHOU"Lirong1,"ZHENG"Xuewen1,"REN"Xiaoyu1,"FENG"Xuejie2,"CHEN"Di3,"HE"Xiaolong4,"LIANG"Qingzhi1*,"YANG"Zhuanying1*
1."College"of"Coastal"Agricultural"Sciences,"Guangdong"Ocean"University,"Zhanjiang,nbsp;Guangdong"524000,"China;"2."Institute"of"Tropical"Fruit"Tree,"Hainan"Academy"of"Agricultural"Sciences,"Haikou,"Hainan"570100,"China;"3."Yangxi"County"Xiliwang"Fruit"and"Vegetable"Professional"Cooperative,"Yangjiang,"Guangdong"529500,"China;"4."South"Subtropical"Crops"Research"Institute,"Chinese"Academy"of"Tropical"Agricultural"Sciences,"Zhanjiang,"Guangdong"524000,"China
Abstract:"Sucrose"phosphate"synthase"(SPS)"plays"a"crucial"role"in"the"sucrose"synthesis"process,"and"investigating"the"biological"functions"of"the"SPS"family"in"durian"(Durio"zibethinus"Murr.)"can"contribute"to"enhancing"fruit"quality."In"the"durian"genome,"10"SPS"members"were"identified"and"designated"as"DzSPS1"to"DzSPS10."The"results"indicated"that"the"average"hydrophobicity"coefficient"was"less"than"0,"with"isoelectric"points"ranging"from"5.70"to"6.68,"suggesting"that"they"are"hydrophilic"acidic"proteins."Subcellular"localization"predictions"primarily"placed"them"on"the"cell"membrane"and"nucleus."Analysis"of"conserved"motifs"within"the"gene"family"revealed"variationsnbsp;in"the"number"and"distribution"of"motifs"among"durian"SPS"members,"although"all"contained"motif"3,"indicating"that"motif"3"is"a"significant"conserved"domain"within"the"durian"SPS"gene"family."Gene"structure"analysis"showed"that"durian"SPS"genes"were"structurally"similar,"containing"8"to"15"exons"and"7"to"13"introns."Phylogenetic"tree"analysis"demonstrated"that"durian"SPS"genes"could"be"divided"into"two"subfamilies,"with"subfamily"Ⅱ"comprising"nine"members"and"subfamily"Ⅰ"containing"one"member."Compared"to"SPS"genes"in"horticultural"fruit"trees"such"as"cacao"and"citrus,"durian"SPS"genes"exhibited"closer"phylogenetic"relationships"with"Arabidopsis"and"rice"SPS"genes."Seven"members"of"the"durian"SPS"family"shared"high"spatial"structural"similarity,"with"secondary"structures"predominantly"consisting"of"α-helices"and"random"coils."Cis-acting"element"analysis"suggested"that"durian"SPS"genes"may"be"readily"induced"by"response"elements"related"to"light,"low"temperature,"drought,"and"gibberellin."This"study"detected"that"the"primary"soluble"sugars"in"durian"fruit"are"sucrose,"fructose,"and"glucose,"with"sucrose"content"significantly"higher"than"that"of"fructose"and"glucose,"and"notable"differences"observed"among"different"varieties."Fluorescence"quantitative"analysis"revealed"significant"variations"in"SPS"expression"levels"among"different"durian"varieties,"with"the"expression"patterns"of"DzSPS3"and"DzSPS7"correlating"with"changes"in"total"sugar"content"between"varieties,"suggesting"that"DzSPS3"and"DzSPS7"may"be"key"members"involved"in"sugar"accumulation."By"analyzing"the"structure"and"physicochemical"properties"of"durian"SPS"genes"and"exploring"the"SPS"accumulation"characteristics"in"different"varieties,"this"study"would"provide"a"reference"for"further"investigation"into"the"biological"functions"of"the"SPS"family"in"durian.
Keywords:"Durio"zibethinus"Murr.;"sucrose"phosphate"synthetase"(SPS);"bioinformatics;"gene"expression
DOI:"10.3969/j.issn.1000-2561.2025.05.005
榴蓮(Durio"zibethinus"Murr.)是木棉科熱帶常綠喬木,被譽為“水果之王”,其氣味濃烈,是一種獨特的熱帶水果。果實外形呈橢圓形,表面布滿堅硬的刺。果肉多呈淡黃色,口感細膩,味道獨特,香甜濃郁。榴蓮具有很高的營養(yǎng)價值,富含多種維生素、礦物質(zhì)和膳食纖維,有助于補充身體所需的營養(yǎng),增強免疫力,促進消化[1]。榴蓮原產(chǎn)于東南亞地區(qū),現(xiàn)廣泛種植于泰國、馬來西亞等國家和地區(qū),其中,泰國的種植面積最大,近幾年在我國廣東和海南也有榴蓮的引種栽培。據(jù)統(tǒng)計,目前我國是世界上最大的榴蓮進口和消費國,2021年,我國對鮮食榴蓮的進口額和進口量分別達42.1億美元和82.2萬t[2]。由此可知,我國的榴蓮市場開發(fā)潛力巨大。不過市場上的榴蓮果實品質(zhì)參差不齊,提升榴蓮果實品質(zhì)具有重要意義。
蔗糖是植物能量、信號分子和碳骨架的來源,是植物中儲存和運輸碳水化合物的重要形式之一[3]。蔗糖磷酸合酶(sucrose"phosphate"synthase,SPS)是植物體內(nèi)調(diào)節(jié)蔗糖生成的一個關(guān)鍵酶,在植物的光合組織中展現(xiàn)出較高的活性,對蔗糖的生物合成過程具有顯著影響。SPS的特點是利用二磷酸尿苷葡萄糖(UDPG)作為葡萄糖的供體,在蔗糖的合成過程中,SPS首先催化UDP-葡萄糖與6-磷酸果糖生成6-磷酸蔗糖,然后通過磷酸酯酶的作用水解脫去磷酸基團,最終形成蔗糖[4-7],SPS是蔗糖合成的關(guān)鍵限速酶。該酶不僅參與植物的生長和產(chǎn)量形成,還在植物應(yīng)對逆境的過程中扮演重要角色[6],其活性受植物生長周期、光照條件、代謝產(chǎn)物以及內(nèi)源性物質(zhì),如激素和糖類等眾多因素的復(fù)雜影響和調(diào)控[8]。
前人已對多種植物的SPS家族進行相關(guān)研究,如石榴中鑒定出4個SPS家族成員[9];香蕉中鑒定出3個SPS基因[10];蘋果中鑒定出7個SPS基因[3];馬鈴薯中鑒定出4個SPS基因[11]。但對榴蓮SPS基因的研究較少。因此,本研究通過對公開獲得的榴蓮高質(zhì)量基因組數(shù)據(jù)進行搜索,鑒定出10個榴蓮SPS基因家族成員,分別命名為DzSPS1~DzSPS10,并對其進行生物信息學(xué)分析,包括理化特性、染色體定位、保守序列、基因結(jié)構(gòu)分析、二級三級結(jié)構(gòu)模型以及系統(tǒng)發(fā)育關(guān)系、順式作用元件分析等特征的研究,并檢測榴蓮果實中可溶性糖的主要成分,采用熒光定量試驗分析不同品種榴蓮的SPS表達水平,對糖組分和榴蓮SPS表達水平進行相關(guān)性分析,解析其在不同榴蓮品種中的表達模式,為今后深入研究榴蓮果實蔗糖積累的分子機制提供理論依據(jù)。
1.1""榴蓮SPS基因家族成員的鑒定和理化性質(zhì)分析
從National"Center"for"Biotechnology"Information網(wǎng)站(https://www.ncbi.nlm.nih.gov/)獲取的Thorn"Biosystems"(2017)"Cultivar:"Musang"King基因組版本[12]獲取榴蓮基因組數(shù)據(jù)。將下載的蛋白序列使用BLAST構(gòu)建本地數(shù)據(jù)庫,通過TAIR11數(shù)據(jù)庫(https://www.arabidopsis.org/)獲取擬南芥SPS基因家族的蛋白序列,將榴蓮和擬南芥SPS家族蛋白序列進行BLAST比對;同時,從pfam數(shù)據(jù)庫(http://pfam.sanger.ac.uk)中下載典型的SPS家族蛋白結(jié)構(gòu)的隱馬爾科夫模型[13],利用HMMER軟件搜索含有特征結(jié)構(gòu)域的蛋白序列[14]。將上述2種方法篩選出的候選蛋白進行合并,利用SnapGene軟件進行多重比對,手工去除不完整或者冗余序列,使用Pfam及SMART在線分析工具(http://smart.emblheidelberg.de/)對篩選結(jié)果進行檢驗,刪除不含SPS基因家族結(jié)構(gòu)域或者含有SPS結(jié)構(gòu)域但不完整的基因序列,最終得到10個榴蓮SPS基因,并將其分別命名為DzSPS1~"DzSPS10,所有基因均含有SPS特征結(jié)構(gòu)域[15]。利用在線工具Expasy(https://web.expasy.org/"protparam/)[16]對這些蛋白質(zhì)的理化性質(zhì)進行分析,并通過WOLF"PSORT在線網(wǎng)站(https://"wolfpsort.hgc.jp/)[17]進行亞細胞定位預(yù)測。
1.2""榴蓮SPS基因家族保守序列和基因結(jié)構(gòu)分析
通過MEME在線工具(https://meme-suite.org/"meme/)對榴蓮SPS蛋白序列中的保守結(jié)構(gòu)域進行預(yù)測,其中設(shè)置10個motif的數(shù)量,其他參數(shù)保持默認。隨后,利用TBtools軟件對這些保守結(jié)構(gòu)域進行可視化展示。依據(jù)榴蓮基因組注釋信息,通過GSDS[18]在線平臺(https://gsds.gao-lab."org/index.php)對榴蓮SPS基因的結(jié)構(gòu)進行可視化繪制。
1.3""榴蓮SPS蛋白系統(tǒng)進化分析
使用TAIR11數(shù)據(jù)庫(https://www.arabidopsis."org/)獲取擬南芥SPS蛋白序列,使用水稻數(shù)據(jù)庫(https://Rice"Genome"Annotation"Project)獲取水稻SPS蛋白序列,利用National"Center"for"Biotechnology"Information網(wǎng)站(https://www.ncbi."nlm.nih.gov/)獲取可可樹、柑橘、番木瓜、荔枝的SPS蛋白序列,利用在線網(wǎng)站BLAST(https://blast.ncbi.nlm.nih.gov/Blast.cgi)與鑒定得到的10個榴蓮SPS基因進行BLAST比對,再利用MEGA"11軟件構(gòu)建系統(tǒng)發(fā)育樹,bootstrap設(shè)置為1000次[19],使用在線網(wǎng)站ITOL(https://itol.embl.de/)[20]對進化樹進行美化。
1.4""榴蓮SPS家族的二級、三級結(jié)構(gòu)分析
使用在線網(wǎng)站PRABI(https://doua.prabi.fr/"software/cap3)[21]對榴蓮SPS進行二級結(jié)構(gòu)預(yù)測,進行數(shù)據(jù)匯總。利用在線網(wǎng)站SWISS-MODEL(https://swissmodel.expasy.org/interactive)[22]對榴蓮SPS進行三級結(jié)構(gòu)預(yù)測。
1.5""榴蓮SPS啟動子順式作用元件分析
根據(jù)榴蓮基因組注釋信息和全基因組序列,通過TBtools[23]軟件提取榴蓮SPS基因編碼序列上游2000個堿基對的區(qū)域作為啟動子,并將這些啟動子序列上傳至在線平臺PlantCare(https://bioin formatics.psb.ugent.be/webtools/plantcare/html/)[24]預(yù)測順式調(diào)控元件。對PlantCare的分析結(jié)果進行簡化整理后,進一步使用TBtools軟件對啟動子區(qū)域進行可視化展示。
1.6""不同品種榴蓮果實中糖組分分析
取馬來西亞榴蓮園區(qū)成熟期的5個品種(紅肉、黑刺、金枕、蘇丹王和貓山王)果實,經(jīng)液氮速凍后冷凍運輸保存,備用。在經(jīng)微波滅酶處理后的1"g果肉樣品中加入2"mL超純水進行勻漿處理。然后使用超純水對研缽進行2次清洗,并將溶液定容至10"mL;取2"mL提取液,在13"000×g離心力下離心15"min;取上清液過柱處理后,采用高效液相色譜儀進行檢測,每個樣品重復(fù)測定3次。參照楊轉(zhuǎn)英等[25]的高效液相色譜法(HPLC)分析果實中的糖組分。
1.7""不同品種榴蓮SPS基因表達鑒定
取馬來西亞榴蓮園區(qū)成熟期的紅肉、黑刺、金枕、蘇丹王和貓山王5個品種的果實,經(jīng)液氮速凍后冷凍運輸保存。利用National"Center"for"Biotechnology"Information網(wǎng)站(https://www.ncbi."nlm.nih.gov/)設(shè)計熒光定量引物(表1),于生工生物工程(上海)股份有限公司合成,參照YANG等[26]熒光定量PCR方法分析不同榴蓮品種果肉的SPS基因表達水平,不同榴蓮品種樣品進行3次生物學(xué)重復(fù),并采用2–ΔΔCt方法計算基因表達量。
2.1""榴蓮SPS基因家族鑒定及編碼蛋白基本理化性質(zhì)
榴蓮中篩選出10個SPS家族成員,利用在線網(wǎng)站PSLP預(yù)測其亞細胞定位,采用Expasy預(yù)測蛋白的理化性質(zhì),利用TBtools進行染色體定位。結(jié)果表明,10個SPS基因分布在榴蓮的9條染色體上,其中Dz10染色體上均有2個SPS基因,數(shù)量最多,其余8條染色體上的SPS基因較少(圖1)。從表2可以看出,所有榴蓮SPS蛋白的平均疏水系數(shù)均低于0,即10個榴蓮SPS蛋白均為親水蛋白;其分子量在48"112.78~119"881.85"Da范圍內(nèi),氨基酸數(shù)目在423~1064之間;等電點為5.70~6.68,均小于7,均為酸性蛋白。通過預(yù)測其亞細胞定位發(fā)現(xiàn),榴蓮的蔗糖磷酸合酶分布廣泛,但主要集中在細胞膜和細胞核上。
2.2""榴蓮SPS基因家族保守基序和基因結(jié)構(gòu)分析
利用MEME在線工具對榴蓮SPS基因家族的蛋白質(zhì)序列進行保守基序分析,預(yù)測了10個保守基序,并利用TBtools進行美化。從預(yù)測的保守基序來看,每個榴蓮SPS的motif數(shù)量和分布有一定差異,10個榴蓮SPS蛋白均含有家族中最基本的motif"3(圖2),說明motif"3是榴蓮SPS基因家族重要的保守結(jié)構(gòu)域。DzSPS1、DzSPS2、
DzSPS3、DzSPS4、DzSPS6、DzSPS8均含有motif"1~motif"10,且各motif的相對位置(N-C順序)按motif"5-motif"7-motif"8-motif"6-motif"3-motif"9-motif"4-motif"1-motif"2-motif"10的順序出現(xiàn),說明榴蓮SPS蛋白序列高度保守,在榴蓮繁衍進化中具有重要意義。
利用GSDS網(wǎng)站對榴蓮SPS基因結(jié)構(gòu)進行分析,從圖3可以看出,榴蓮SPS基因結(jié)構(gòu)較為相似,含有8~15個外顯子,7~13個內(nèi)含子,基因的外顯子數(shù)目均大于8,這10個SPS基因結(jié)構(gòu)極為相似,但其長度存在一定差異。
2.3""榴蓮SPS蛋白系統(tǒng)進化分析
使用MEGA"11軟件對10個榴蓮SPS蛋白、13個水稻SPS蛋白、8個擬南芥SPS蛋白、5個可可樹SPS蛋白、7個柑橘SPS蛋白、1個番木瓜SPS蛋白以及1個荔枝SPS蛋白的氨基酸序列進行比對,并構(gòu)建系統(tǒng)發(fā)育進化樹(圖4)。根據(jù)進化關(guān)系分析得出,榴蓮SPS蛋白可劃分為2個亞類。在這2個亞家族中,榴蓮SPS蛋白的分布數(shù)量不同,其中亞類Ⅱ包含的榴蓮SPS蛋白最多,共有9個,而亞類Ⅰ則包含1個榴蓮SPS蛋白,與可可樹、柑橘等園藝果樹SPS蛋白相比,榴蓮SPS蛋白與擬南芥SPS蛋白、水稻SPS蛋白的親緣關(guān)系更近。
2.4""榴蓮SPS家族的二級、三級結(jié)構(gòu)分析
利用PRABI在線網(wǎng)站對榴蓮SPS家族二級結(jié)構(gòu)進行預(yù)測,結(jié)果表明,榴蓮SPS蛋白存在α-螺旋(占34.35%~44.35%)、延伸鏈(占11.06%~"20.47%)、β-轉(zhuǎn)角(占5.44%~7.06%)和無規(guī)卷曲(占37.72%~40.66%)4種二級結(jié)構(gòu)(表3)。這4種類型的二級結(jié)構(gòu)含量相對穩(wěn)定,表現(xiàn)出特定的保守特性。
榴蓮SPS蛋白的主要結(jié)構(gòu)由α-螺旋和無規(guī)則卷曲構(gòu)成,通過SWISS-MODEL在線平臺進行同源建模分析。結(jié)果顯示DzSPS1、DzSPS2、DzSPS3、DzSPS4、DzSPS6、DzSPS7、DzSPS8的空間結(jié)構(gòu)相似;DzSPS5、DzSPS9、DzSPS10的空間結(jié)構(gòu)相似,但表現(xiàn)出更短且簡單(圖5)。
2.5""榴蓮SPS啟動子順式作用元件分析
利用TBtools軟件提取榴蓮SPS家族基因起始密碼子前2000個堿基對的啟動子序列,并通過PlantCARE在線分析工具對榴蓮SPS基因的表達調(diào)控元件進行預(yù)測。如圖6所示,在環(huán)境變化響應(yīng)元件中,10個SPS基因均含有大量的光響應(yīng)元件,其余干旱、低溫、厭氧、防御和應(yīng)激環(huán)境變化響應(yīng)元件則少量分布在不同的基因中,說明榴蓮SPS基因參與調(diào)控榴蓮的光合作用、開花、葉片伸展和葉綠體發(fā)育等生物學(xué)過程。在內(nèi)源激素響應(yīng)元件中發(fā)現(xiàn)榴蓮SPS基因存在少量赤霉素響應(yīng)元件,說明榴蓮SPS基因參與植物激素的誘導(dǎo)表達。
2.6""榴蓮SPS基因表達模式分析
2.6.1""不同品種榴蓮果實糖組分分析""由圖7可知,榴蓮果實中的可溶性糖組分主要有果糖、葡萄糖和蔗糖,其中蔗糖含量明顯高于果糖和葡萄糖,果糖和葡萄糖含量接近1∶1。不同品種中總糖及3種糖組分含量具有顯著性差異,貓山王果實中總糖、果糖、葡萄糖及蔗糖含量均最高,而金枕中含量最低。蘇丹王果實中蔗糖及總糖含量僅低于貓山王,果糖和葡萄糖含量除低于貓山王外,也低于黑刺。紅肉品種蔗糖及總糖含量低于蘇丹王及貓山王,而高于黑刺與金枕;紅肉果糖與葡萄糖含量顯著低于黑刺與貓山王,與金枕和蘇丹王含量無顯著差異。
2.6.2""不同品種榴蓮果實中SPS表達量分析"nbsp;通過熒光定量PCR分析不同品種榴蓮果實的SPS表達量,結(jié)果表明,不同品種各基因表達量存在顯著差異(圖8)。DzSPS1和DzSPS9在黑刺中表達量最高,DzSPS2、DzSPS3和DzSPS6在紅肉品種中表達量最高,DzSPS4在蘇丹王中表達最高,DzSPS5、DzSPS7、DzSPS8和DzSPS10在貓山王中表達最高。其中,不同榴蓮品種的DzSPS3表達量與果實的蔗糖、總糖含量呈極顯著正相關(guān),DzSPS7表達量與果實的蔗糖、總糖含量呈顯著正相關(guān)(表4),推測DzSPS3和DzSPS7可能在榴蓮果實糖分積累中起著關(guān)鍵的作用。
本研究從榴蓮的全基因組中鑒定出10個榴蓮SPS基因家族成員,分別命名為DzSPS1~"DzSPS10。這些成員具有相似的蛋白理化特性,均為酸性親水蛋白,亞細胞定位預(yù)測主要集中在細胞膜和細胞核上,同樣在柑橘[28]和櫻桃[29]中有類似報道。榴蓮SPS家族保守性分析發(fā)現(xiàn),每個榴蓮SPS的motif數(shù)量和分布有一定的差異,但均含有家族中最基本的motif"3,說明motif"3是榴蓮SPS基因家族重要的保守結(jié)構(gòu)域。后續(xù)可以對motif"3作進一步研究。在蘋果[30]和獼猴桃[31]等物種中也有相似的研究。基因結(jié)構(gòu)分析發(fā)現(xiàn),榴蓮SPS基因結(jié)構(gòu)較為相似,含有8~15個外顯子,7~13個內(nèi)含子,基因的外顯子數(shù)目均大于8,類似的基因結(jié)構(gòu)分析在木薯[32]和荔枝[33]研究中也有發(fā)現(xiàn)。蛋白系統(tǒng)進化分析結(jié)果顯示,榴蓮SPS與水稻SPS、擬南芥SPS親緣關(guān)系較近,親緣關(guān)系較近的家族成員具有相似的基因結(jié)構(gòu)、保守區(qū)域和保守基序[34]。
蛋白質(zhì)二級、三級結(jié)構(gòu)的預(yù)測與空間結(jié)構(gòu)分析對了解其功能具有重要意義[35]。二極結(jié)構(gòu)預(yù)測中,榴蓮SPS的α-螺旋和無規(guī)則卷曲占比較高,延伸鏈、β-轉(zhuǎn)角占比較低;三級空間結(jié)構(gòu)分析發(fā)現(xiàn)大多數(shù)榴蓮SPS成員均具有相似的結(jié)構(gòu)。蛋白質(zhì)的結(jié)構(gòu)決定了其功能,進一步研究榴蓮SPS蛋白質(zhì)的二級、三級結(jié)構(gòu),有助于揭示榴蓮SPS的功能。啟動子順式作用元件分析發(fā)現(xiàn),基因的表達往往受多重因素的影響[36],榴蓮SPS基因家族成員均含有大量的光響應(yīng)元件,表明其可能參與調(diào)控榴蓮的光合作用、開花、葉片伸展和葉綠體發(fā)育等生物學(xué)過程。
通過分析不同品種榴蓮果實糖組分發(fā)現(xiàn),榴蓮果實中的可溶性糖組分主要有果糖、葡萄糖和蔗糖,其中蔗糖含量顯著高于果糖和葡萄糖,不同品種中總糖及3種糖組分含量均有顯著差異。熒光定量PCR及相關(guān)性分析發(fā)現(xiàn),不同品種的DzSPS3表達量與果實的蔗糖、總糖含量呈極顯著正相關(guān),DzSPS7表達量與果實的蔗糖、總糖含量呈顯著正相關(guān),推測DzSPS3和DzSPS7可能在榴蓮果實糖分積累中起著關(guān)鍵的作用,可以進一步研究DzSPS3和DzSPS7在榴蓮果實中的糖分積累機制。
蔗糖磷酸合酶(SPS)在蔗糖代謝路徑中扮演著重要的角色,對果樹作物的生長、發(fā)育以及品質(zhì)塑造具有顯著影響[32,"37]。郭雪飛等[38]研究表明,在棗果實的發(fā)育早期,蔗糖的積累與分解酶的活性呈負相關(guān),而在果實發(fā)育的中后期,則與蔗糖磷酸合酶的活性呈正相關(guān)。李雯等[39]在香蕉中的研究發(fā)現(xiàn),SPS在香蕉果實的成熟、衰老和糖的積累及果實軟化等方面扮演著重要角色。在葡萄和草莓果實成熟過程中的蔗糖積累機制[40]研究結(jié)果表明,蔗糖磷酸合酶和蔗糖轉(zhuǎn)運蛋白1(SUT1)的轉(zhuǎn)錄水平在果實成熟過程中迅速增加。LI等[41]研究發(fā)現(xiàn),在菠蘿蜜果實成熟過程中,總可溶性糖和蔗糖含量迅速增加,而葡萄糖和果糖含量的增加則較慢,表明SPS和蔗糖合成酶(SuSy)是負責蔗糖合成的關(guān)鍵酶。這些研究結(jié)果進一步說明,蔗糖磷酸合酶在多種水果果實的糖積累和成熟過程中起著關(guān)鍵作用,且其作用機制因果樹種類和發(fā)育階段的不同而有差異。本研究通過生物信息學(xué)方法對榴蓮的10個SPS基因進行全面鑒定和分析,今后將利用不同發(fā)育階段的榴蓮果實樣本,深入探究榴蓮SPS家族成員的生物學(xué)功能,揭示SPS在榴蓮糖分積累中的作用機制,有助于了解榴蓮果實品質(zhì)形成理論。
參考文獻
[1]"彭文麗,"楊成坤,"崔志富,"趙成志,"王紅."榴蓮PEPC基因家族全基因組鑒定及表達分析[J]."分子植物育種,"2022,"20(1):"76-85.PENG"W"L,"YANG"C"K,"CUI"Z"F,"ZHAO"C"Z,"WANG"H."Genome-wide"identification"and"expression"analysis"of"PEPC"gene"family"in"durian"(Durio"zibethinus"Murr.)[J]."Molecular"Plant"Breeding,"2022,"20(1):"76-85."(in"Chinese)
[2]"馮學(xué)杰,"羅志文,"郭利軍,"華敏,"謝圣華,"李向宏,"王祥和,"鄧會棟."榴蓮幼樹栽培關(guān)鍵技術(shù)[J]."中國熱帶農(nóng)業(yè),"2022(5):"77-80,"76."FHENG"X"J,"LUO"Z"W,"GUO"L"J,"HUA"M,"XIE"S"H,"LI"X"H,"WANG"X"H,"DENG"H"D."Key"cultivation"technologies"for"durian"saplings[J]."China"Tropical"Agriculture,"2022(5):"77-80,"76."(in"Chinese)
[3]"ZHANG"L"H,"ZHU"L"C,"XU"Y,"LV"L,"LI"X"G,"LI"W"H,"LIU"W"D,"MA"F"Y,"LI"M"J,"HAN"D."Genome-wide"identification"and"function"analysis"of"the"sucrose"phosphate"synthase"MdSPS"gene"family"in"apple[J]."Journal"of"Integrative"Agriculture,"2023,"22(7):"2080-2093.
[4]"曾德雯,"朱龍英,"馮巖,"朱為民,"張迎迎."高等植物蔗糖磷酸合成酶(SPS)的研究進展[J]."植物生理學(xué)報,"2020,"56(5):"931-938."ZHENG"D"W,"ZHU"L"Y,"FENG"Y,"ZHU"W"M,"ZHANG"Y"Y."Research"advance"of"sucrose"phosphate"synthase"(SPS)"in"higher"plant[J]."Plant"Physiology"Journal,"2020,"56(5):"931-938."(in"Chinese)
[5]"蘇紀勇,"姚圓,"劉玉含,"韓秋宇,"張雯露."蔗糖磷酸合酶功能、結(jié)構(gòu)與催化機制的研究進展[J]."生物工程學(xué)報,"2021,"37(6):"1858-1868.SU"J"Y,"YAO"Y,"LIU"Y"H,"HAN"Q"Y,"ZHANG"W"L."Function,"structure"and"catalytic"mechanism"of"sucrose"phosphate"synthase:"a"review[J]."Chinese"Journal"of"Biotechnology,"2021,"37(6):"1858-1868."(in"Chinese)
[6]"LU"W,"HAO"W"H,"LIU"K"X,"LIU"J"H,"YIN"C"M,"SU"Y"J,"HANG"Z"Y,"PENG"B,"LIU"H,"XIONG"B,"LIAO"L,"HE"J"X,"ZHANG"M"F,"WANG"X,"WANG"Z"H."Analysis"of"sugar"components"and"identification"of"SPS"genes"in"citrus"fruit"development[J]."Frontiers"in"Plant"Science,"2024,"15:"1372809.
[7]"LAURA"B,"EDOARDO"T,"LIBERO"G,"PAOLO"T,"GIUSEPPE"F,"FRANCESCA"S."Arabidopsis"thaliana"sucrose"phosphate"synthase"A2"affects"carbon"partitioning"and"drought"response[J]."Biology,"2023,"12(5):"685.
[8]"吳建陽,"陳妹,"姚艷麗,"張秀梅."植物蔗糖磷酸合成酶(SPS)基因研究進展[J]."分子植物育種,"2022,"20(8):"2597-2606.WU"J"Y,"CHEN"M,"YAO"Y"L,"ZHANG"X"M."Research"progress"of"sucrose"phosphate"synthetase"(SPS)"gene"in"plants[J]."Molecular"Plant"Breeding,"2022,"20(8):"2597-2606."(in"Chinese)
[14]"EDDY"S"R."Hidden"markov"models[J]."Current"Opinion"in"Structural"Biology,"1996,"6(3):"361-365.
[15]"張積森,"鄭月霞,"鄒麗娟,"葉冰瑩,"陳由強,"陳如凱."酵母單雜交方法初步鑒定甘蔗SPSⅢ啟動子區(qū)域調(diào)控序列[J]."農(nóng)業(yè)生物技術(shù)學(xué)報,"2012,"20(11):"1282-1290.ZHANG"J"S,"ZHENG"Y"X,"ZOU"L"J,"YE"B"Y,"CHEN"Y"Q,"CHEN"R"K."Preliminary"identification"of"binding"protein"genes"of"cis-element"in"promoter"region"of"sugarcane"(Saccharum"spp.)"SPS"Ⅲ"by"yeast"one-hybrid"library[J]."Journal"of"Agricultural"Biotechnology,"2012,"20(11):"1282-1290."(in"Chinese)
[16]"SéVERINE"D,"CHIARA"G,"FRéDéRIQUE"L,"HEINZ"S,"VASSILIOS"I,"CHRISTINE"D."Expasy,"the"Swiss"bioinformatics"resource"portal,"as"designed"by"its"users[J]."Nucleic"Acids"Research,nbsp;2021,"49:"W216-W227.
[17]"PAUL"H,"KEUN-JOON"P,"TAKESHI"O,"NAOYA"F,"HAJIME"H,"ADAMS-COLLIER"C"J,"KENTA"N."WoLF"PSORT:"protein"localization"predictor[J]."Nucleic"Acids"Research,"2007,"35(W1):"W585-W587.
[18]"郭安源,"朱其慧,"陳新,"羅靜初."GSDS:"基因結(jié)構(gòu)顯示系統(tǒng)[J]."遺傳,"2007,"29(8):"1023-1026."GUO"A"Y,"ZHU"Q"H,"CHEN"X,"LUO"J"C."GSDS:"a"gene"structure"display"server[J]."Hereditas"(Beijing),"2007,"29(8):"1023-1026."(in"Chinese)
[19]"KOICHIRO"T,"GLEN"S,"SUDHIR"K."MEGA11:"molecular"evolutionary"genetics"analysis"version"11[J]."Molecular"Biology"and"Evolution,"2021,"38(7):"3022-3027.
[20]"LETUNIC"I,"BORK"P."Interactive"tree"of"life"(iTOL)"v6:"recent"updates"to"the"phylogenetic"tree"display"and"annotation"tool[J]."Nucleic"Acids"Research,"2024,"52(W1):"W78-"W82.
[21]"PICARD"F,"PERRIèRE"G."Bioinformatics"developments"for"NGS"data"analysis"at"PRABI[J]."EMBnet."Journal,"2012,"17(B):"12.
[22]"BHUMIKA"C,"BINDU"S."Swiss-Model:"a"web-based"computational"tool"for"designing"of"protein"structures[J]."Biotech"Today,"2021,"10(2):"43-44.
[23]"CHEN"C"J,"WU"Y,"LI"J"W,"WANG"X,"ZENG"Z"H,"XU"J,"LIU"Y"L,"FENG"J"T,"CHEN"H,"HE"Y"H,"XIE"R."TBtools-II:"a"“One"for"All,"All"for"One”"bioinformatics"platform"for"biological"big-data"mining[J]."Molecular"Plant,"2023,"16(11):"1733-1742.
[24]"LESCOT"M,"DéHAIS"P,"THIJS"G,"MARCHAL"K,"MOREAU"Y,"PEER"Y"V"D,"ROUZé"P,"ROMBAUTS"S."PlantCARE,"a"database"of"plant"cis-acting"regulatory"elements"and"a"portal"to"tools"for"in"silico"analysis"of"promoter"sequences[J]."Nucleic"Acids"Research,"2002,"30(1):"325-327.
[25]"楊轉(zhuǎn)英,"王惠聰,nbsp;趙志常,"秦永華,"胡桂兵."不同產(chǎn)地荔枝果實糖含量及組成的比較[J]."熱帶作物學(xué)報,"2012,"33(8):"1398-1402.YANG"Z"Y,"WANG"H"C,"ZHAO"Z"C,"QIN"Y"H,"HU"G"B."A"comparative"study"on"the"sugar"accumulation"and"composition"in"the"aril"of"litchi"from"different"regions[J]."Chinese"Journal"of"Tropical"Crops,"2012,"33(8):"1398-1402."(in"Chinese)
[26]"YANG"Z"Y,"WANG"T"D,"WANG"H"C,"HUANG"X"M,"QIN"Y"H,"HU"G"B."Patterns"of"enzyme"activities"and"gene"expressions"in"sucrose"metabolism"in"relation"to"sugar"accumulation"and"composition"in"the"aril"of"Litchi"chinensis"Sonn.[J]."Journal"of"Plant"Physiology,"2013,"170(8):"731-740.
[27]"THONGKUM"M,"MCATEE"P"M,"SCHAFFER"R"J,"ALLAN"A"C,"KETSA"S."Characterization"and"differential"expression"of"ethylene"receptor"genes"during"fruit"development"and"dehiscence"of"durian"(Durio"zibethinus)[J]."Scientia"Horticulturae,"2018,"240:"623-630.
[28]"魏清江,"馬張正,"勒思,"雷常玉,"馬巧利,"辜青青."柑橘磷酸蔗糖合酶基因CsSPS的鑒定和表達[J]."園藝學(xué)報,"2020,"47(2):"334-344.WEI"Q"J,"MA"Z"Z,"LE"S,"LEI"C"Y,"MA"Q"L,"GU"Q"Q."Identification"and"expression"analysis"of"sucrose-phosphate"synthase"(SPS)"genes"in"citrus[J]."Acta"Horticulturae"Sinica,"2020,"47(2):"334-344."(in"Chinese)
[29]"齊希梁,"劉聰利,"宋露露,"李明."甜櫻桃磷酸蔗糖合酶基因Pav"SPS的功能分析[J]."園藝學(xué)報,"2021,"48(8):"1446-1456.QI"X"L,"LIU"C"L,"SONG"L"L,"LI"M."Functional"analysis"of"sucrose-phosphate"synthase"genes"(SPS)"in"sweet"cherry[J]."Acta"Horticulturae"Sinica,"2021,"48(8):"1446-1456."(in"Chinese)
[30]"SUN"Y"J,"SHI"Z"D,"JIANG"Y"P,"ZHANG"X"H,"LI"X"A,"LI"F"J."Effects"of"preharvest"regulation"of"ethylene"on"carbohydrate"metabolism"of"apple"(Malus"domestica"Borkh"cv."Starkrimson)"fruit"at"harvest"and"during"storage[J]."Scientia"Horticulturae,"2021,"276:"109748.
[31]"LIAO"G"L,"LI"Y"Q,"WANG"H"L,"LIU"Q,"ZHONG"M,"JIA"D"F,"HUANG"C"H,"XU"X"B."Genome-wide"identification"and"expression"profiling"analysis"of"sucrose"synthase"(SUS)"and"sucrose"phosphate"synthase"(SPS)"genes"family"in"Actinidia"chinensis"and"A."eriantha[J]."BMC"Plant"Biology,"2022,"22(1):"215.
[32]"HUANG"T"W,"LUO"X"L,"WEI"M"G,"SHAN"A"Y,"ZHU"Y"M,"YANG"Y,"FAN"Z"P."Molecular"cloning"and"expression"analysis"of"sucrose"phosphate"synthase"genes"in"cassava"(Manihot"esculenta"Crantz)[J]."Scientific"Reports,"2020,"10(1):"20707.
[33]"WANG"D,"ZHAO"J"T,"HU"B,"LI"J"Q,"QIN"Y"Q,"CHEN"L"H,"QIN"Y"H,"HU"G."Identification"and"expression"profile"analysis"of"the"sucrose"phosphate"synthase"gene"family"in"Litchi"chinensis"Sonn.[J]."PeerJ,"2018,"6:"e4379.
[34]"SOLíS-GUZMáN"M"G,"ARGüELLO-ASTORGA"G,"LóPEZ-BUCIO"J,"RUIZ-HERRERA"L"F,"LóPEZ-MEZA"J"E,"SáNCHEZ-CALDERóN"L,"CARREóN-ABUD"Y,"MARTíNEZ-TRUJILLO"M."Arabidopsis"thaliana"sucrose"phosphate"synthase"(SPS)"genes"are"expressed"differentially"in"organs"and"tissues,"and"their"transcription"is"regulated"by"osmotic"stress[J]."Gene"Expression"Patterns,"2017,nbsp;25/26:"92-101.
[35]"??∑?,"苗小榮,"黎東海,"李夢玲,"黃維."甘蔗細胞壁蔗糖轉(zhuǎn)化酶基因SoCIN2的克隆和表達分析[J]."分子植物育種,"2022,"20(15):"4967-4974.NIU"J"Q,"MIAO"X"R,"LI"D"H,"LI"M"L,"HUANG"W."Cloning"and"expression"analysis"of"cell"wall"invertase"gene"SoCIN2"in"sugarcane[J]."Molecular"Plant"Breeding,"2022,"20(15):"4967-4974."(in"Chinese)
[36]"陳雪,"吉春容,"巴特爾·巴克,"胡啟瑞,"楊明鳳,"郭燕云,"劉愛琳."膜下滴灌條件下棉花花鈴期光合特征參數(shù)對干旱脅迫的響應(yīng)[J]."中國農(nóng)學(xué)通報,"2023,"39(19):"1-8.CHEN"X,"JI"C"R,"BATEE"B,"HU"Q"R,"YANG"M"F,"GUO"Y"Y,"LIU"A"L."Response"of"photosynthetic"characteristic"parameters"of"cotton"at"flower"and"boll"stages"to"drought"stress"under"mulched"drip"irrigation[J]."Chinese"Agricultural"Science"Bulletin,"2023,"39(19):"1-8."(in"Chinese)
[37]"ZHANG"Y"Y,"ZENG"D"W,"LIU"Y"H,"ZHU"W"M."SlSPS,"a"sucrose"phosphate"synthase"gene,"mediates"plant"growth"and"thermotolerance"in"tomato[J]."Horticulturae,"2022,"8(6):"491.
[38]"郭雪飛,"周曉鳳,"馮一峰,"蒲小秋,"吳翠云."兩種糖積累型棗品種果實糖積累生理代謝機制研究[J]."植物生理學(xué)報,"2019,"55(6):"837-846.GUO"X"F,"ZHOU"X"F,"FENG"Y"F,"PU"X"Q,"WU"C"Y."Physiological"metabolic"mechanism"of"sugar"accumulation"in"fruit"of"two"sugar-accumulated"jujube"varieties[J]."Plant"Physiology"Journal,"2019,"55(6):"837-846."(in"Chinese)
[39]"李雯,"邵遠志,"莊軍平,"陳維信."蔗糖磷酸合成酶與香蕉果實成熟、衰老的關(guān)系[J]."園藝學(xué)報,"2006(5):"1087-1089.LI"W,"SHAO"Y"Z,"ZHUANG"J"P,"CHEN"W"X."Relationships"between"the"sucrose"phosphate"synthase"and"ripening,"senescence"of"banana"fruits[J]."Acta"Horticulturae"Sinica,"2006(5):"1087-1089."(innbsp;Chinese)
[40]"TIAN"L,"JIA"H"F,"LI"C"L,"FAN"P"G,"XING"Y,"SHEN"Y"Y."Sucrose"accumulation"during"grape"berry"and"strawberry"fruit"ripening"is"controlled"predominantly"by"sucrose"synthase"activity[J]."The"Journal"of"Horticultural"Science"and"Biotechnology,"2012,"87(6):"661-667.
[41]"LI"Z"Y,"DUAN"X"Q,"LIU"S"H,"LI"Y,"ZHANG"Z"H,"YE"C"H."Changes"in"soluble"sugar"accumulation"and"activities"of"sucrose-metabolizing"enzymes"during"fruit"ripening"of"jackfruit[J]."Journal"of"Agricultural"Science,"2017,"9(8):"155-166.